Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11038
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                124   3e-29
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     30   0.77 
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)                      29   1.3  
SB_57206| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)                 29   2.3  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             27   7.2  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score =  124 bits (299), Expect = 3e-29
 Identities = 54/76 (71%), Positives = 66/76 (86%), Gaps = 1/76 (1%)
 Frame = +2

Query: 2   DYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP 181
           D+++PKHT++E +PNL VIKA+QSLKSRGYV+E+F W+H+YW LTNEGI YLR FLHLP 
Sbjct: 26  DFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKFCWKHYYWNLTNEGITYLRDFLHLPT 85

Query: 182 EIVPATLKRSV-RTET 226
           EIVPATL+R V R ET
Sbjct: 86  EIVPATLRRQVTRAET 101


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 295 RTPAAPGVAPHDK-KADVGPGS 357
           +TPA PG+AP D  K  VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386


>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
          Length = 585

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 304 AAPGVAPHDKKADVGP 351
           A PG+APHDKK+  GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560


>SB_57206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +1

Query: 199 T*ALSTYRDSTPWPCWSSCAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 375
           T ALS Y  S+P+PC    AP   ++  S Y  +P +PG        +  P S DL+ +
Sbjct: 28  TVALSPYLPSSPYPCH---APLPVSQPLSPY-MSPFSPGAMVRIPAFNQNPISRDLDLQ 82


>SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)
          Length = 1193

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
 Frame = +1

Query: 220  RDSTPWPCWSSCAPA--RSAEDRSAYRRTPAAPGVAPHD----KKADVGPGSADLE 369
            RD+  WP  S+      R  E   AYR TP    + PHD     ++ VG    DLE
Sbjct: 872  RDTLYWPRMSTDLKEYIRKCEVCMAYRNTPGKEPLKPHDFVARPRSKVGADLCDLE 927


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +2

Query: 38  IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 217
           I  +  ++ +  + SRG+VK+ +A+    W   +  + +L  +L L P+I   +  R++R
Sbjct: 129 ITAIYTLEMICKIISRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLAPDIASLSGIRTLR 187


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 364  DQLSLDQHQPFYHEVQHQGQQEYVCMQICPQ 272
            D+   D H+ + HE + QG  E +C   CP+
Sbjct: 978  DESEEDGHEDYCHECE-QGGDELICCDGCPR 1007


>SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 304 AAPGVAPHDKKADVGP 351
           A  G+APHDKKA  GP
Sbjct: 377 ARHGLAPHDKKAGRGP 392


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 325  EVQHQGQQEYVCMQICPQQSGLGHRTTNRATAYCL 221
            E     QQ  VC+++  + S +    T RA+A CL
Sbjct: 1283 ENDSMSQQPAVCLEVTERASAVCLEVTERASAVCL 1317


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 238 PCWSSCAPARSAEDRSAYRRTPAAPG 315
           P  S+  P R   DR   RRTP  PG
Sbjct: 643 PSTSTVLPRRQPGDRKRQRRTPYKPG 668


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,493,585
Number of Sequences: 59808
Number of extensions: 236178
Number of successful extensions: 606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)