Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11038
(451 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 97 7e-21
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 2.1
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 28 3.6
U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical ... 27 6.3
Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical p... 27 8.3
AF100669-9|AAK39269.1| 605|Caenorhabditis elegans Dipeptidyl pe... 27 8.3
AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine re... 27 8.3
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 96.7 bits (230), Expect = 7e-21
Identities = 43/72 (59%), Positives = 54/72 (75%)
Frame = +2
Query: 2 DYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP 181
D++A H +E + NL+VIK ++SL SR VKEQFAWRH+YWYLT+ GI YLR +L LP
Sbjct: 26 DFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQFAWRHYYWYLTDAGILYLREYLALPA 85
Query: 182 EIVPATLKRSVR 217
EIVPAT+K R
Sbjct: 86 EIVPATIKTKPR 97
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 370 IQDQLSLDQHQPFYHEVQHQGQQE 299
+Q+Q + Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 205 ALSTYRDSTPWPCWSSC-APARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 369
A T +TP P + + S++D + ++TPA P KKA+ S+D E
Sbjct: 417 AKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 247 SSCAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 375
SS + + E + A + TPA P P KKA+ S+D E K
Sbjct: 219 SSSSDSSDDEKKPAAKPTPAKPTPKPVVKKAESSSDSSDDEKK 261
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 226 STPWPCWSSC-APARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 375
+TP P + + S++D + ++TPA P KKA+ S+D E K
Sbjct: 271 ATPKPAAKKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321
>U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical
protein F47E1.3 protein.
Length = 594
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 208 LSTYRDSTPWPCWSSCAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 357
LS +D++P P +S PA S S R+T A PG A ++ D P S
Sbjct: 83 LSIPKDTSPPPFMTS--PATSNNSVSVARKTSAPPGFAQYE--PDTAPPS 128
>AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical
protein Y40D12A.2 protein.
Length = 512
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 11 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 142
AP ++ +PNL + ++S GY+ + FYWY+ +E
Sbjct: 16 APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57
>Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical
protein C25A1.10b protein.
Length = 696
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 247 SSCAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 375
SS + + E + A + TPA P P KKA+ S+D E K
Sbjct: 219 SSSSDSSDDEKKPAAKPTPAKPTPKPVVKKAESSSDSSDDEKK 261
>AF100669-9|AAK39269.1| 605|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 7, isoform a protein.
Length = 605
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 268 SGLGHRTTNRATAYCLCTY*ALKCCRHNFRRKVQEYSQVFNT-LIG*VPVKVPPGKLF 98
S LG ++ + TA LCT+ HNF + ++ N+ ++ +P V PG F
Sbjct: 330 SQLGSQSDGKFTASLLCTHKPENDTIHNFHIYPMSFQKIGNSAILYMLPECVSPGSKF 387
>AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine
receptor, class i protein77 protein.
Length = 324
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 41 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 211
P +QV+ + + ++ E F W+ T+ I + +F+ PP +I+ LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,145,876
Number of Sequences: 27780
Number of extensions: 178576
Number of successful extensions: 568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -