Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11038
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   107   3e-24
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   105   1e-23
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   102   1e-22
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   2.5  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  107 bits (258), Expect = 3e-24
 Identities = 44/69 (63%), Positives = 58/69 (84%)
 Frame = +2

Query: 2   DYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP 181
           D++ P+H  +E +PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGI++LR +L+LP 
Sbjct: 26  DFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPS 85

Query: 182 EIVPATLKR 208
           EIVPATLK+
Sbjct: 86  EIVPATLKK 94


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  105 bits (253), Expect = 1e-23
 Identities = 44/72 (61%), Positives = 60/72 (83%)
 Frame = +2

Query: 2   DYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP 181
           D++ PKH  ++ +PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP 
Sbjct: 26  DFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPS 84

Query: 182 EIVPATLKRSVR 217
           ++VPATLK+S +
Sbjct: 85  DVVPATLKKSAK 96


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  102 bits (245), Expect = 1e-22
 Identities = 43/72 (59%), Positives = 59/72 (81%)
 Frame = +2

Query: 2   DYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP 181
           D++  KH  ++ +PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP 
Sbjct: 26  DFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPS 84

Query: 182 EIVPATLKRSVR 217
           ++VPATLK+S +
Sbjct: 85  DVVPATLKKSAK 96


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 14  PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 103
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,566,499
Number of Sequences: 28952
Number of extensions: 156956
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)