Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11037
(746 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 168 1e-40
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 115 1e-24
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 113 6e-24
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 112 8e-24
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 100 4e-20
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 98 2e-19
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 94 3e-18
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 94 3e-18
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 92 1e-17
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 80 7e-14
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 78 2e-13
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 70 5e-11
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 9e-11
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 68 3e-10
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 67 5e-10
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 7e-10
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 66 7e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 9e-10
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 65 2e-09
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 64 5e-09
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 62 1e-08
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 62 1e-08
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 61 2e-08
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 60 8e-08
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 57 4e-07
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 57 4e-07
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 56 9e-07
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 54 3e-06
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 54 4e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 7e-06
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 52 2e-05
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 49 1e-04
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 48 2e-04
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 48 3e-04
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 47 4e-04
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 44 0.004
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 42 0.021
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 42 0.021
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 38 0.20
UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613; ... 38 0.35
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 38 0.35
UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC pre... 36 1.4
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 3.2
UniRef50_Q00UH9 Cluster: 26S proteasome subunit RPN5b; n=2; Ostr... 34 3.2
UniRef50_Q980D5 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 34 4.3
UniRef50_A2Y1D8 Cluster: Putative uncharacterized protein; n=1; ... 33 5.6
UniRef50_A0NFE5 Cluster: ENSANGP00000023517; n=1; Anopheles gamb... 33 5.6
UniRef50_Q12215 Cluster: Cell wall integrity and stress response... 33 5.6
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 6.4
UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=... 33 7.5
UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 7.5
UniRef50_UPI0000F1F8B1 Cluster: PREDICTED: hypothetical protein;... 33 9.9
UniRef50_UPI0000DA292B Cluster: PREDICTED: similar to Calpain sm... 33 9.9
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 33 9.9
UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin... 33 9.9
UniRef50_Q9VWU0 Cluster: CG15046-PA; n=2; Sophophora|Rep: CG1504... 33 9.9
UniRef50_Q5AY83 Cluster: Putative uncharacterized protein; n=2; ... 33 9.9
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 9.9
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 33 9.9
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 168 bits (408), Expect = 1e-40
Identities = 80/85 (94%), Positives = 83/85 (97%)
Frame = +3
Query: 255 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 434
LYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEVVVSGKLRGQ
Sbjct: 86 LYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQ 145
Query: 435 RAKSMKFVDGLMIHSGDPCNDYVNT 509
RAKSMKFVDGLMIHSGDP N YV+T
Sbjct: 146 RAKSMKFVDGLMIHSGDPVNYYVDT 170
Score = 145 bits (351), Expect = 1e-33
Identities = 70/81 (86%), Positives = 76/81 (93%)
Frame = +1
Query: 13 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 192
ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGR 64
Query: 193 RIRELTSVVQKRFNIPEQSVD 255
RIRELT+VVQKRF PE SV+
Sbjct: 65 RIRELTAVVQKRFGFPEGSVE 85
Score = 92.3 bits (219), Expect = 1e-17
Identities = 41/55 (74%), Positives = 44/55 (80%)
Frame = +2
Query: 509 ATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 673
A RHVLLRQGVLGIKVKIMLPWD GK GPKKP PDH+ + EPKDE +P P SE
Sbjct: 171 AVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 115 bits (276), Expect = 1e-24
Identities = 58/84 (69%), Positives = 68/84 (80%)
Frame = +1
Query: 4 VNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 183
V +SKKRKF DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 184 KGRRIRELTSVVQKRFNIPEQSVD 255
KG++I+ELTSVVQKRF E SV+
Sbjct: 62 KGKKIKELTSVVQKRFEFLENSVE 85
Score = 57.6 bits (133), Expect = 3e-07
Identities = 42/95 (44%), Positives = 51/95 (53%)
Frame = +3
Query: 222 EAIQHSRAICRLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 401
E +++S +C AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 78 EFLENSVELC---AEKVNNRGFYAIAQAESLRYKLLGGLAM------------------- 115
Query: 402 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVN 506
L QRAKSMKF DG +I SG P DY++
Sbjct: 116 -------LCAQRAKSMKFKDGYLISSGQPVKDYID 143
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/43 (58%), Positives = 28/43 (65%)
Frame = +2
Query: 509 ATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEP 637
A RHVL RQGVLGIKVKIM WD +GK P PD + + P
Sbjct: 145 AVRHVL-RQGVLGIKVKIMFNWDPKGKQSLTTPLPDLVTIQTP 186
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 113 bits (271), Expect = 6e-24
Identities = 52/91 (57%), Positives = 68/91 (74%)
Frame = +3
Query: 252 RLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 431
+L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R++MESGA+GCEV + GK++G
Sbjct: 136 QLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIRYVMESGAKGCEVTIGGKIKG 195
Query: 432 QRAKSMKFVDGLMIHSGDPCNDYVNTLPDMC 524
QRAKSM F DG MI SG +V+T C
Sbjct: 196 QRAKSMTFRDGYMIKSGTAHKHFVDTATRHC 226
Score = 109 bits (262), Expect = 7e-23
Identities = 53/86 (61%), Positives = 67/86 (77%)
Frame = +1
Query: 13 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 192
+SKKR V DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 193 RIRELTSVVQKRFNIPEQSVDCMLKR 270
RIRELT+ +Q+RFN E + +R
Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAER 141
Score = 35.5 bits (78), Expect = 1.4
Identities = 21/44 (47%), Positives = 24/44 (54%)
Frame = +2
Query: 509 ATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 640
ATRH LR G +G+ VKIM P Q + PD I V EPK
Sbjct: 222 ATRHCHLRAGTIGVNVKIMRP---QSMIEEDEVLPDVITVIEPK 262
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 112 bits (270), Expect = 8e-24
Identities = 51/84 (60%), Positives = 64/84 (76%)
Frame = +3
Query: 255 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 434
+YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLRF M +GA+G EVV+SGKLR
Sbjct: 87 IYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLRFAMGAGAKGVEVVISGKLRAA 146
Query: 435 RAKSMKFVDGLMIHSGDPCNDYVN 506
RAKS K+ DG MIHSG P D+++
Sbjct: 147 RAKSQKYADGFMIHSGQPTRDFID 170
Score = 109 bits (262), Expect = 7e-23
Identities = 51/86 (59%), Positives = 65/86 (75%)
Frame = +1
Query: 13 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 192
+SKK+K V DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 193 RIRELTSVVQKRFNIPEQSVDCMLKR 270
RI ELTS++ KRF + + + +R
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAER 91
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = +2
Query: 509 ATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 646
A RHVL+RQGVLGIKVKIM + GP + PD + + E KDE
Sbjct: 172 AIRHVLMRQGVLGIKVKIMKD-PAANRFGP-RALPDAVKIAEAKDE 215
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 100 bits (239), Expect = 4e-20
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = +3
Query: 255 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 434
+ EKV +GLCA+ QA +R K++GG+ RRA L+ + A+GC+++VSGKL+GQ
Sbjct: 97 IVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIVSGKLKGQ 156
Query: 435 RAKSMKFVDGLMIHSGDPCNDYVNT 509
RAKS+KF DG++IHSGD DY+NT
Sbjct: 157 RAKSVKFQDGVLIHSGDAVKDYINT 181
Score = 57.2 bits (132), Expect = 4e-07
Identities = 23/81 (28%), Positives = 49/81 (60%)
Frame = +1
Query: 28 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 207
+F+ +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 208 TSVVQKRFNIPEQSVDCMLKR 270
+ +R +P++SV+ ++++
Sbjct: 81 QHLAAQRLEVPDESVEIVVEK 101
Score = 50.0 bits (114), Expect = 6e-05
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +2
Query: 530 RQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 643
+QGV+GI+V+IMLP+D +G GP P PD I + EP +
Sbjct: 189 KQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 97.9 bits (233), Expect = 2e-19
Identities = 41/83 (49%), Positives = 60/83 (72%)
Frame = +3
Query: 255 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 434
++ +++ +GL A+ Q ESLRYKLI + RRA Y ++RF+M++GARGCEV +SGKLRG
Sbjct: 87 IFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDAGARGCEVAISGKLRGA 146
Query: 435 RAKSMKFVDGLMIHSGDPCNDYV 503
RA + K+ +G M+ SGD +V
Sbjct: 147 RASTSKYKEGYMVKSGDVTKQFV 169
Score = 86.2 bits (204), Expect = 8e-16
Identities = 39/85 (45%), Positives = 58/85 (68%)
Frame = +1
Query: 16 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 195
+K R+ + G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ + GRR
Sbjct: 7 TKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFVDNHGRR 66
Query: 196 IRELTSVVQKRFNIPEQSVDCMLKR 270
++E+ ++QKR+ + E S++ + R
Sbjct: 67 LQEVRMMIQKRWRLKEDSLEIFIDR 91
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +2
Query: 509 ATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 643
A H+ ++Q +GI+V IML D G +GPK+ QPD I V E KD
Sbjct: 172 AVGHIPMKQATIGIRVLIMLAQDPSGISGPKESQPDVIKVHEAKD 216
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 94.3 bits (224), Expect = 3e-18
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +1
Query: 16 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 186
SKKR+FV DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
Score = 69.3 bits (162), Expect = 9e-11
Identities = 38/77 (49%), Positives = 46/77 (59%)
Frame = +3
Query: 375 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTLPDMCFSDKEY*ESR 554
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T + S+
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 555 SKSCCRGTSKARTARRS 605
+SC GT A RS
Sbjct: 140 CRSCFPGTQAVTLALRS 156
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 94.3 bits (224), Expect = 3e-18
Identities = 39/85 (45%), Positives = 63/85 (74%)
Frame = +3
Query: 252 RLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 431
+++AE + +GLCA AQ E++ YKL+ + VR A +++ +++ GA+GCE+++SGKL+
Sbjct: 98 QIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEIIISGKLKQ 157
Query: 432 QRAKSMKFVDGLMIHSGDPCNDYVN 506
QRAK+MKF G MI +G P NDY++
Sbjct: 158 QRAKTMKFKQGYMICTGQPKNDYID 182
Score = 88.6 bits (210), Expect = 1e-16
Identities = 39/80 (48%), Positives = 58/80 (72%)
Frame = +1
Query: 13 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 192
I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 193 RIRELTSVVQKRFNIPEQSV 252
+ +ELT +QKRF + +
Sbjct: 78 KHKELTQFLQKRFGYSDDQI 97
Score = 50.4 bits (115), Expect = 5e-05
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Frame = +2
Query: 509 ATRHVLLRQGVLGIKVKIMLPWDQQ--GKNGPKKPQPDHILVTEPK 640
A RHV +QG++G+KVKIMLP++ K G K P PD++++ PK
Sbjct: 184 AVRHVFFKQGIMGVKVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPK 229
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 92.3 bits (219), Expect = 1e-17
Identities = 42/54 (77%), Positives = 47/54 (87%)
Frame = +3
Query: 342 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV 503
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYI 83
Score = 58.4 bits (135), Expect = 2e-07
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = +2
Query: 512 TRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 664
TRH LLRQG +G++VKIML D +G++GP P PD +++ PK++ +P
Sbjct: 87 TRHALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKEDEDMAKP 137
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 79.8 bits (188), Expect = 7e-14
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +3
Query: 255 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 434
++ +K+ RGL A ++LR KL + +RRA Y ++R M +GA GCEV+V+GKLR Q
Sbjct: 92 IWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRAGAAGCEVIVAGKLRAQ 151
Query: 435 RAKSMKFVDGLMIHSGDP 488
RA++ KF +G +I +G P
Sbjct: 152 RARANKFKEGCLISTGHP 169
Score = 42.3 bits (95), Expect = 0.012
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +1
Query: 28 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 207
K++ D + +AEL+EF +REL + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 208 TSVVQKRFNIPEQS----VDCMLKRWL 276
++ RF ++ VD ++KR L
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGL 102
Score = 33.9 bits (74), Expect = 4.3
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +2
Query: 509 ATRHVLLRQGVLGIKVKIMLP 571
ATRH+ +RQGV+G+KV+I P
Sbjct: 177 ATRHIKMRQGVIGVKVRIYNP 197
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 78.2 bits (184), Expect = 2e-13
Identities = 37/52 (71%), Positives = 42/52 (80%)
Frame = +3
Query: 255 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 410
LYAEK R AIAQAESLR+KL+GGL VRRA YGVL F+MESG +GCEV+
Sbjct: 140 LYAEKFNNRVFYAIAQAESLRFKLLGGLVVRRAGYGVLSFVMESGTKGCEVI 191
Score = 58.4 bits (135), Expect = 2e-07
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +1
Query: 139 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVDCMLKRW 273
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E +V+ +++
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKF 145
Score = 41.5 bits (93), Expect = 0.021
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +2
Query: 449 EVCRWTHDPLWRPLQ*LRQHATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 598
EV W +P++ RHVLL+QGVL IKVKI++ QG+ GP
Sbjct: 189 EVIGWYIISSGQPVKDYINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 70.1 bits (164), Expect = 5e-11
Identities = 32/53 (60%), Positives = 39/53 (73%)
Frame = +2
Query: 482 RPLQ*LRQHATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 640
+P++ A RHVLLRQGVLGIKVKIML WD GK GPK P PD++++ PK
Sbjct: 19 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPLPDNVVIHMPK 71
Score = 38.3 bits (85), Expect = 0.20
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 432 QRAKSMKFVDGLMIHSGDPCNDYVNT 509
QRAKSMKF DG M+ SG P +Y+++
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDS 27
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.3 bits (162), Expect = 9e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +1
Query: 82 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 216
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 67.7 bits (158), Expect = 3e-10
Identities = 26/81 (32%), Positives = 55/81 (67%)
Frame = +1
Query: 13 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 192
++ +++F+ DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 193 RIRELTSVVQKRFNIPEQSVD 255
IR++T+ ++ RFN+ + VD
Sbjct: 61 NIRKITTELEDRFNLDDPQVD 81
Score = 52.0 bits (119), Expect = 2e-05
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +3
Query: 303 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 482
A+ L L G R+A + + IMESGA G E+V+SGK+ G R++ KF G + H+G
Sbjct: 96 ADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNG 155
Query: 483 DPCNDYVNT 509
+P + V++
Sbjct: 156 EPAEEIVDS 164
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 66.9 bits (156), Expect = 5e-10
Identities = 28/78 (35%), Positives = 51/78 (65%)
Frame = +1
Query: 22 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 201
+R F+ + V + ++EFL +EL GY G++++ TP+ +++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 202 ELTSVVQKRFNIPEQSVD 255
ELT +++K+F + ++
Sbjct: 64 ELTRILEKQFGLENPQIE 81
Score = 65.7 bits (153), Expect = 1e-09
Identities = 35/85 (41%), Positives = 49/85 (57%)
Frame = +3
Query: 252 RLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 431
++ E++ L A QA L L G+ RRA Y LR IM +GARG E+ +SGKL G
Sbjct: 79 QIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTG 138
Query: 432 QRAKSMKFVDGLMIHSGDPCNDYVN 506
+RAKS++F G + G+P V+
Sbjct: 139 ERAKSIRFYQGYLAKVGNPAETLVS 163
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.5 bits (155), Expect = 7e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +1
Query: 82 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 219
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 66.5 bits (155), Expect = 7e-10
Identities = 35/82 (42%), Positives = 49/82 (59%)
Frame = +3
Query: 261 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRA 440
A++V L A A L + G R+A + LR +M +GA GCEVV+SGKL G R+
Sbjct: 82 AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARS 141
Query: 441 KSMKFVDGLMIHSGDPCNDYVN 506
+ KFVDG + HSG+P + V+
Sbjct: 142 RVEKFVDGYIKHSGNPVEEVVD 163
Score = 64.1 bits (149), Expect = 3e-09
Identities = 31/95 (32%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Frame = +1
Query: 22 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 201
++KFV DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 202 ELTSVVQKRFNIPEQSVDCM-LKRWLLVAFALSPR 303
+LT V ++++ +D +KR L A ++ R
Sbjct: 64 KLTRDVANKYSLENPQIDAQEVKRPELNAQMMASR 98
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 9e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1
Query: 82 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 216
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +1
Query: 82 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 177
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +1
Query: 10 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 147
+ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 63.7 bits (148), Expect = 5e-09
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = +3
Query: 303 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 482
A L L G RRA Y L IME+GA+GCE+ +SGKL +RA++ KFV G ++H+G
Sbjct: 95 ASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTG 154
Query: 483 DPCNDYV 503
DP V
Sbjct: 155 DPAESMV 161
Score = 50.4 bits (115), Expect = 5e-05
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +1
Query: 22 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 201
+RKFV + + K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 202 ELTSVVQKRFNI--PEQSVD 255
LT + K F I P+ SVD
Sbjct: 64 ALTEKL-KDFGIENPQVSVD 82
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/80 (41%), Positives = 45/80 (56%)
Frame = +3
Query: 264 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 443
++V A AE L L G R+A +R IMESGA GCEV+V+GKL G R++
Sbjct: 83 QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSR 142
Query: 444 SMKFVDGLMIHSGDPCNDYV 503
+ KF +G + H G+P V
Sbjct: 143 TQKFTEGYIKHCGEPSETIV 162
Score = 60.5 bits (140), Expect = 4e-08
Identities = 25/78 (32%), Positives = 49/78 (62%)
Frame = +1
Query: 22 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 201
++KF+ DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 202 ELTSVVQKRFNIPEQSVD 255
+LT + ++I V+
Sbjct: 64 QLTQDLATDYDIESPQVE 81
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/67 (43%), Positives = 45/67 (67%)
Frame = +3
Query: 303 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 482
A L L G+ RRA YG LR IM +GA+G +++SGKL G RA++ KF++G + + G
Sbjct: 104 ARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCG 163
Query: 483 DPCNDYV 503
+P ++Y+
Sbjct: 164 EPGDEYM 170
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +1
Query: 10 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 189
N+ +KFV G+ K EL+E+L EL GY G+ ++ P ++II R +G +G
Sbjct: 7 NVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRG 66
Query: 190 RRIRELTSVVQKRF 231
R IR + VQ+RF
Sbjct: 67 RNIRRVEEEVQERF 80
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 61.3 bits (142), Expect = 2e-08
Identities = 31/96 (32%), Positives = 52/96 (54%)
Frame = +3
Query: 219 TEAIQHSRAICRLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 398
T A ++S ++ ++V L + L G+ R+ + +R +M SGA+G
Sbjct: 67 TLATEYSVKNPQIEVKQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKG 126
Query: 399 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVN 506
++VSGKL G+R+++ KF+DG M H G+P VN
Sbjct: 127 VAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVN 162
Score = 55.2 bits (127), Expect = 2e-06
Identities = 22/78 (28%), Positives = 45/78 (57%)
Frame = +1
Query: 22 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 201
+R FVG+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 202 ELTSVVQKRFNIPEQSVD 255
ELT + +++ ++
Sbjct: 63 ELTETLATEYSVKNPQIE 80
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 59.7 bits (138), Expect = 8e-08
Identities = 23/78 (29%), Positives = 50/78 (64%)
Frame = +1
Query: 22 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 201
++ FV +G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 202 ELTSVVQKRFNIPEQSVD 255
+T ++ +F++ V+
Sbjct: 63 AITQKLKNKFDLENPQVE 80
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +3
Query: 303 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 482
A + L G+ RR Y +R IM +GA+G EV +SGK+RG R+ + KF DG + G
Sbjct: 95 AHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCG 154
Query: 483 DPCNDYV 503
+P +V
Sbjct: 155 EPSVKHV 161
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 57.2 bits (132), Expect = 4e-07
Identities = 24/77 (31%), Positives = 50/77 (64%)
Frame = +1
Query: 22 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 201
K+ F+ + + +++E+L + GYS VE++ TP+ + +II A R+ +++G +G+ I+
Sbjct: 9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIK 68
Query: 202 ELTSVVQKRFNIPEQSV 252
++T V+++ F IP V
Sbjct: 69 QITKVLEEWFGIPNPQV 85
Score = 53.6 bits (123), Expect = 5e-06
Identities = 33/73 (45%), Positives = 41/73 (56%)
Frame = +3
Query: 267 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 446
KV L A A L L G RRA Y LR IM +GA G +V VSGKLRG+RA+
Sbjct: 89 KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARF 148
Query: 447 MKFVDGLMIHSGD 485
K++ G + SG+
Sbjct: 149 EKYIAGKVYKSGN 161
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 57.2 bits (132), Expect = 4e-07
Identities = 25/77 (32%), Positives = 44/77 (57%)
Frame = +1
Query: 22 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 201
KR F+ + K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 202 ELTSVVQKRFNIPEQSV 252
+L + +K F + +
Sbjct: 65 QLAQIFEKVFGLENPQI 81
Score = 46.0 bits (104), Expect = 0.001
Identities = 26/66 (39%), Positives = 37/66 (56%)
Frame = +3
Query: 285 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 464
L A A L L G RRA + +R IM +GA G E+++SGKL +RA+ K +G
Sbjct: 91 LNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEG 150
Query: 465 LMIHSG 482
++ SG
Sbjct: 151 IVYKSG 156
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 56.0 bits (129), Expect = 9e-07
Identities = 31/80 (38%), Positives = 45/80 (56%)
Frame = +3
Query: 267 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 446
+V + L A A + L+ G+ RRA L IM +GARG E+V+SGKL QR ++
Sbjct: 85 EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRT 144
Query: 447 MKFVDGLMIHSGDPCNDYVN 506
KF G + SG+P + V+
Sbjct: 145 EKFTRGYVPKSGEPGEELVD 164
Score = 50.0 bits (114), Expect = 6e-05
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +1
Query: 25 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 204
RK + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 205 LTSVVQKRFNIPEQSVD 255
+ V+++ F I +D
Sbjct: 66 IAEVLEREFGIENPQID 82
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 54.4 bits (125), Expect = 3e-06
Identities = 27/66 (40%), Positives = 39/66 (59%)
Frame = +1
Query: 58 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 237
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 238 PEQSVD 255
VD
Sbjct: 76 KSPQVD 81
Score = 38.3 bits (85), Expect = 0.20
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 333 GLAVRRACYGVLRFIMES-GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 482
G A RRA ++ IME A G ++ +SGKLRG R+ K G++ +G
Sbjct: 106 GTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAG 156
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 54.0 bits (124), Expect = 4e-06
Identities = 24/77 (31%), Positives = 44/77 (57%)
Frame = +1
Query: 22 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 201
KR F+ K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 202 ELTSVVQKRFNIPEQSV 252
+L V++K F + +
Sbjct: 65 QLAQVLEKFFGLENPQI 81
Score = 49.2 bits (112), Expect = 1e-04
Identities = 30/66 (45%), Positives = 36/66 (54%)
Frame = +3
Query: 285 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 464
L A A L L G RRA + +R IM SGA G EV+VSGKL +RAK K +G
Sbjct: 91 LNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEG 150
Query: 465 LMIHSG 482
+ SG
Sbjct: 151 TVYKSG 156
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 7e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1
Query: 82 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 222
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 51.6 bits (118), Expect = 2e-05
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +3
Query: 345 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNT 509
R + LRF++ SG RGC + + G R +R K+ KF GL+ HSG ND++++
Sbjct: 158 RSIIFNTLRFLINSGVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDS 212
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 49.2 bits (112), Expect = 1e-04
Identities = 18/79 (22%), Positives = 45/79 (56%)
Frame = +1
Query: 19 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 198
K+RKF+ + V + + E++ +E G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 199 RELTSVVQKRFNIPEQSVD 255
+++T ++K++ I ++
Sbjct: 62 QQMTDTLEKKYGIETPQIE 80
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/62 (33%), Positives = 38/62 (61%)
Frame = +3
Query: 303 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 482
A+ + L G + R+A L +++GA+G + +SGK+ G+RA+ KF+ G + +SG
Sbjct: 95 AKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKFIYGNVKYSG 154
Query: 483 DP 488
+P
Sbjct: 155 EP 156
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +3
Query: 345 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV 503
RR +LR +ME+GA G E+++SGKLR +RA+ K G + +GD DYV
Sbjct: 113 RRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMV-DYV 164
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +1
Query: 22 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 201
K F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR
Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66
Query: 202 ELTSVVQKRFNIPEQSV 252
+L +++Q F + ++
Sbjct: 67 KLMTIMQTHFGLENVNI 83
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/85 (31%), Positives = 43/85 (50%)
Frame = +3
Query: 252 RLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 431
RL ++ L A A L L G RRA + + IM++GARGC +++SGK+ G
Sbjct: 83 RLEVNEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMDAGARGCLIILSGKISG 142
Query: 432 QRAKSMKFVDGLMIHSGDPCNDYVN 506
R + KF G + G+ +++
Sbjct: 143 PRHRVQKFQQGHIKFCGETALQFMD 167
Score = 41.1 bits (92), Expect = 0.028
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +1
Query: 25 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 204
R F+ V + + E+L RE G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 205 LTSVVQKRFNI 237
L ++ F +
Sbjct: 69 LQYRLKSDFKL 79
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 47.2 bits (107), Expect = 4e-04
Identities = 20/77 (25%), Positives = 42/77 (54%)
Frame = +1
Query: 25 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 204
+K + + K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E
Sbjct: 12 KKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKE 71
Query: 205 LTSVVQKRFNIPEQSVD 255
+++++ + + +D
Sbjct: 72 ISNILTTKLGVENPQID 88
Score = 42.3 bits (95), Expect = 0.012
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +3
Query: 333 GLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 482
G+ RR + +R +ME+GA+G E+VVSGKL +RA+ K G + G
Sbjct: 116 GVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIG 165
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3
Query: 333 GLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 482
G+ RRA LR + E+ +G EV++SGKL +R++ K+ G++I +G
Sbjct: 104 GIRFRRAAIIALRQLQEANVQGAEVIISGKLTTERSRFEKYTTGIVIKAG 153
Score = 43.2 bits (97), Expect = 0.007
Identities = 17/77 (22%), Positives = 42/77 (54%)
Frame = +1
Query: 25 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 204
++ + D K + E+L L + Y ++ T + + I+I+A + ++G KG++++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 205 LTSVVQKRFNIPEQSVD 255
L +++ +FN+ +D
Sbjct: 63 LADILKSKFNLDNVVID 79
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 41.5 bits (93), Expect = 0.021
Identities = 23/77 (29%), Positives = 45/77 (58%)
Frame = -1
Query: 506 VDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSD 327
V+ ++ ++RVDHE++ L G+ ++Q +N T T H ++++T+ +++ +T
Sbjct: 102 VNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLSTSSHGKSQHTVGGSSHWQTVQ 161
Query: 326 KLVS*RFGLGDSAKATS 276
+L FGL DS+ TS
Sbjct: 162 QLGFQGFGL-DSSGQTS 177
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 41.5 bits (93), Expect = 0.021
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 339 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 482
A RR L IM +GA G E+V++G+L GQR K+ +F G + +G
Sbjct: 108 AYRRLAQRYLETIMNAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTG 155
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 38.3 bits (85), Expect = 0.20
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +3
Query: 339 AVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 464
A RRA + +MESGARG +V++SG+L G ++A++ K ++G
Sbjct: 130 AFRRAMKQAAQRVMESGARGVKVILSGRLGGAEQARTEKVLEG 172
>UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613;
n=1; Homo sapiens|Rep: CDNA FLJ45717 fis, clone
FELNG2001613 - Homo sapiens (Human)
Length = 237
Score = 37.5 bits (83), Expect = 0.35
Identities = 21/62 (33%), Positives = 25/62 (40%)
Frame = +1
Query: 475 TLETLAMITSTRYQTCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARA 654
+L A + +R CAS RS R Q Q P P A RP PG+ A
Sbjct: 99 SLPAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAA 158
Query: 655 PR 660
PR
Sbjct: 159 PR 160
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 37.5 bits (83), Expect = 0.35
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 285 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVD 461
L A AE++ +L G +A RRA + M GA G ++ VSG+L G + A+S F +
Sbjct: 110 LDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQVSGRLNGAEMARSEMFKE 169
Query: 462 G 464
G
Sbjct: 170 G 170
>UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC
precursor - Enterococcus faecalis (Streptococcus
faecalis)
Length = 545
Score = 35.5 bits (78), Expect = 1.4
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 31 FVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 150
FVGDG F+ + EFL +L E+ G++V +TP+ + + +
Sbjct: 397 FVGDGEFEKKAGEFLQGQL-EENLEGLKVNITPVPANVFM 435
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 299 PGRISKIQAYRRSRCTSCLLWCSPFHH 379
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_Q00UH9 Cluster: 26S proteasome subunit RPN5b; n=2;
Ostreococcus|Rep: 26S proteasome subunit RPN5b -
Ostreococcus tauri
Length = 686
Score = 34.3 bits (75), Expect = 3.2
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 472 STLETLAMITSTRYQTCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRA 648
S E + +TST +T +S+ R TR Q V P R P A R R +GRA
Sbjct: 187 SVSENASTMTSTHARTSSSRARRTRVPLQEVVPARPTRAWGPSGARARSRARTRGRGRA 245
>UniRef50_Q980D5 Cluster: Putative uncharacterized protein; n=1;
Sulfolobus solfataricus|Rep: Putative uncharacterized
protein - Sulfolobus solfataricus
Length = 496
Score = 34.3 bits (75), Expect = 3.2
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = -1
Query: 437 TLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFSI 258
T TT + TTT T T ++ STT S +S S + +T+S +
Sbjct: 394 TTTTTSSTTTTSTTTSTTSTTSTSSSTTSTTTSSSSTTTTSSSITSSSTTSSTTSSTSTT 453
Query: 257 QSTDCSGMLNRFCTTEVSSRILRPFS-PSTLCVLVAIIMISER 132
T S T+ VS+ ++ + + V+VA++++ R
Sbjct: 454 TPTSTSSSTTSVTTSGVSTSVIIGIAIVVIIIVIVAVVLLRRR 496
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 33.9 bits (74), Expect = 4.3
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 285 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVD 461
L AI AE + KL R A +R M+SGA+G + VSG+L G A+S + +
Sbjct: 115 LNAIILAEQIAIKLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSE 174
Query: 462 GLM 470
G M
Sbjct: 175 GEM 177
>UniRef50_A2Y1D8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 137
Score = 33.5 bits (73), Expect = 5.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 305 GLGDSAKATSSHLFSIQSTDCSGMLNRFCTTEVSS 201
GLG S T++HL +I S+ C G L R C+ V +
Sbjct: 37 GLGYSQLLTTAHLGAISSSSCGGRLGRQCSAAVGA 71
>UniRef50_A0NFE5 Cluster: ENSANGP00000023517; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000023517 - Anopheles gambiae
str. PEST
Length = 430
Score = 33.5 bits (73), Expect = 5.6
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +1
Query: 475 TLETLAMITSTRYQTCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARA 654
T ++ + R+ A + R +GQ A RP+ A RPH R GR+
Sbjct: 154 TERRVSALLPVRHTAAAGRERVRGERGQAAAGCARAGGGRPDAAPQRPHAAERDGGRSGT 213
Query: 655 PRAD 666
RAD
Sbjct: 214 VRAD 217
>UniRef50_Q12215 Cluster: Cell wall integrity and stress response
component 3 precursor; n=2; Saccharomyces
cerevisiae|Rep: Cell wall integrity and stress response
component 3 precursor - Saccharomyces cerevisiae
(Baker's yeast)
Length = 556
Score = 33.5 bits (73), Expect = 5.6
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -1
Query: 401 TTTGTRFHDETENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFSIQSTDCSGMLNRF 222
+TT + T +T +STT S TS S S ++++ +FS+ S+ S L+
Sbjct: 214 STTSSSTSSTTSSTTSSTTSSTTSSTTSSTTSSTTSSTTSSTTSIFSVTSSSSSITLSSS 273
Query: 221 CTTEVSSRILRPFS 180
T V SR P S
Sbjct: 274 EHTTVDSRTSSPSS 287
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 6.4
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 240 RAICRLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVVV 413
R + L KVA L I A +LR +LI G V GV+ + + A RGCEV +
Sbjct: 115 RRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVTI 174
Score = 23.0 bits (47), Expect(2) = 6.4
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +3
Query: 393 RGCEVVVSGKLRGQRAKSMKFVDGLMI 473
RG ++ +L GQ+ S+ DG ++
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVV 227
>UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=1;
Arabidopsis thaliana|Rep: Uncharacterized protein
At3g06190.2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 295
Score = 33.1 bits (72), Expect = 7.5
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 210 SELTDSASFLSEHTLCPGGHNNDLRADGSD 121
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus
carota|Rep: Glycine-rich protein - Daucus carota
(Carrot)
Length = 111
Score = 33.1 bits (72), Expect = 7.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 359 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 463
W P G WC W C IW S C+ RW
Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66
>UniRef50_UPI0000F1F8B1 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 499
Score = 32.7 bits (71), Expect = 9.9
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 23 SENLLEMGFSRQNSMS--SSLGSWPRTATPAW-KCGSLPSARRSLLWPPGHRVCSERKDA 193
S ++ SR NS+ SS R + W +C L RR+LLW PG VC R+D
Sbjct: 218 SVQFMDYKASRSNSVETHSSERRLQRNPSSEWCECEDLLLRRRALLWRPGGSVC-VREDE 276
Query: 194 ESVSS 208
S S
Sbjct: 277 SSPDS 281
>UniRef50_UPI0000DA292B Cluster: PREDICTED: similar to Calpain small
subunit 1 (CSS1) (Calcium-dependent protease small
subunit 1) (Calcium-dependent protease small subunit)
(CDPS) (Calpain regulatory subunit) (Calcium-activated
neutral proteinase small subunit) (CANP small
subunit)...; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to Calpain small subunit 1 (CSS1)
(Calcium-dependent protease small subunit 1)
(Calcium-dependent protease small subunit) (CDPS)
(Calpain regulatory subunit) (Calcium-activated neutral
proteinase small subunit) (CANP small subunit)... -
Rattus norvegicus
Length = 165
Score = 32.7 bits (71), Expect = 9.9
Identities = 25/52 (48%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 660 SRGTGSSLGSVTR-MWSGCGFFGPFLPCWSHGNMILTLIPSTPCLRSTCLVA 508
SRG G SLG V R + SG G C G +I T IPST L ST L A
Sbjct: 39 SRGLGGSLGKVLRGLISGAAGSGGTAMCGVLGGVIST-IPSTRLLCSTTLSA 89
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 32.7 bits (71), Expect = 9.9
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 303 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIH 476
AE + +L ++ RRA + M GA G +++ SG+L G + A+S ++ +G + +H
Sbjct: 116 AEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTSGRLGGAEMARSEQYKEGRIPLH 175
Query: 477 SGDPCNDY 500
+ DY
Sbjct: 176 TFRADIDY 183
>UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin H
- Ostreococcus tauri
Length = 322
Score = 32.7 bits (71), Expect = 9.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 327 IGGLAVRRACYGVLR----FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 473
+ GL R CYG R F+M+ GC+ S +L R K++ VD LM+
Sbjct: 146 LSGLKFRLVCYGATRPLDGFLMDVEDGGCKGATSKQLIECRKKALDIVDRLML 198
>UniRef50_Q9VWU0 Cluster: CG15046-PA; n=2; Sophophora|Rep:
CG15046-PA - Drosophila melanogaster (Fruit fly)
Length = 494
Score = 32.7 bits (71), Expect = 9.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 8 TIFQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPS 133
T QRS +L+ +G+ + L P P W CG LP+
Sbjct: 364 TRLQRSGSLVAVGWGKGEDTDCPLFEMPMRLRPTWACGDLPN 405
>UniRef50_Q5AY83 Cluster: Putative uncharacterized protein; n=2;
Trichocomaceae|Rep: Putative uncharacterized protein -
Emericella nidulans (Aspergillus nidulans)
Length = 962
Score = 32.7 bits (71), Expect = 9.9
Identities = 26/89 (29%), Positives = 40/89 (44%)
Frame = -1
Query: 419 ARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFSIQSTDCS 240
AR + +TT + TI ST + T ++S + GLG S A+ S L + +
Sbjct: 825 ARRSKISTTSAT----SAGTITSTASTNTVSSVLSPKLGLGSSTSASGSELLVFLDGEET 880
Query: 239 GMLNRFCTTEVSSRILRPFSPSTLCVLVA 153
++RF + LR FS S LV+
Sbjct: 881 ADVHRFISLARGCPALRGFSLSDGPALVS 909
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 9.9
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 354 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 452
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 32.7 bits (71), Expect = 9.9
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 336 LAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 464
+A RRA G ++ + +GA+G +VSG+L G A+ ++ +G
Sbjct: 135 VAFRRAMRGAIQRVQRAGAKGVRTMVSGRLNGADIARKEQYTEG 178
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,184,658
Number of Sequences: 1657284
Number of extensions: 15808579
Number of successful extensions: 53958
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 50756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53843
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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