Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11037
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   139   4e-34
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    28   1.6  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    27   2.1  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    27   2.1  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    27   2.1  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    27   2.8  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   8.7  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  139 bits (336), Expect = 4e-34
 Identities = 62/85 (72%), Positives = 73/85 (85%)
 Frame = +3

Query: 255 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 434
           LYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR  
Sbjct: 88  LYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAA 147

Query: 435 RAKSMKFVDGLMIHSGDPCNDYVNT 509
           RAKSMKF DG MIHSG P  D++++
Sbjct: 148 RAKSMKFADGFMIHSGQPAVDFIDS 172



 Score =  129 bits (311), Expect = 5e-31
 Identities = 64/85 (75%), Positives = 70/85 (82%)
 Frame = +1

Query: 1   AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 180
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 181 EKGRRIRELTSVVQKRFNIPEQSVD 255
           EKGRRIRELT++VQKRF   E +V+
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVE 87



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 30/52 (57%), Positives = 37/52 (71%)
 Frame = +2

Query: 509 ATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 664
           ATRHVLLRQGVLG+KVKIMLP   + K   KK  PD ++V +PK+E    +P
Sbjct: 173 ATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +2

Query: 77  LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 214
           L S+P     AW+   LPS R+  L P      P  R+  ++K A  +SS+P
Sbjct: 8   LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 269 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 373
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 269 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 373
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 269 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 373
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 275 SHLFSIQSTDCSGMLNRFCTTEVSSRILRPFSPST 171
           SHL   +S+     +N F  T  SSR L PFS +T
Sbjct: 119 SHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 429 GQRAKSMKFVDGLMIHSGDPCNDYVNTL 512
           G+R K + F D    H G P  DY++ +
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIHVV 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,848
Number of Sequences: 5004
Number of extensions: 62101
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)