Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11037
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             146   1e-35
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   144   4e-35
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             144   5e-35
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila...    33   0.20 
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    33   0.20 
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai...    29   4.3  
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot...    29   4.3  
At3g42060.1 68416.m04315 myosin heavy chain-related                    29   4.3  
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i...    28   7.6  
At2g25150.1 68415.m03008 transferase family protein similar to 1...    28   7.6  
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    28   7.6  
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ...    27   10.0 
At1g33811.1 68414.m04180 GDSL-motif lipase/hydrolase family prot...    27   10.0 

>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  146 bits (355), Expect = 1e-35
 Identities = 67/84 (79%), Positives = 75/84 (89%)
 Frame = +3

Query: 255 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 434
           LYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  
Sbjct: 86  LYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAA 145

Query: 435 RAKSMKFVDGLMIHSGDPCNDYVN 506
           RAKSMKF DG M+ SG P  +Y++
Sbjct: 146 RAKSMKFKDGYMVSSGQPTKEYID 169



 Score =  139 bits (336), Expect = 2e-33
 Identities = 68/81 (83%), Positives = 74/81 (91%)
 Frame = +1

Query: 13  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 192
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 193 RIRELTSVVQKRFNIPEQSVD 255
           RIRELTS+VQKRF  P+ SV+
Sbjct: 65  RIRELTSLVQKRFKFPQDSVE 85



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 32/56 (57%), Positives = 40/56 (71%)
 Frame = +2

Query: 509 ATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 676
           A RHVLLRQGVLG+KVKIML WD +GK GP  P PD +++  PK++ V + P   V
Sbjct: 171 AVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVV 226


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  144 bits (350), Expect = 4e-35
 Identities = 66/85 (77%), Positives = 75/85 (88%)
 Frame = +3

Query: 255 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 434
           LYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  
Sbjct: 86  LYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAA 145

Query: 435 RAKSMKFVDGLMIHSGDPCNDYVNT 509
           RAKSMKF DG M+ SG P  +Y+++
Sbjct: 146 RAKSMKFKDGYMVSSGQPTKEYIDS 170



 Score =  137 bits (332), Expect = 6e-33
 Identities = 68/81 (83%), Positives = 73/81 (90%)
 Frame = +1

Query: 13  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 192
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 193 RIRELTSVVQKRFNIPEQSVD 255
           RIRELTS+VQKRF  P  SV+
Sbjct: 65  RIRELTSLVQKRFKFPVDSVE 85



 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 31/52 (59%), Positives = 38/52 (73%)
 Frame = +2

Query: 509 ATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 664
           A RHVLLRQGVLGIKVK+ML WD +G +GPK P PD +++  PK+E     P
Sbjct: 171 AVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAP 222


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  144 bits (349), Expect = 5e-35
 Identities = 66/84 (78%), Positives = 74/84 (88%)
 Frame = +3

Query: 255 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 434
           LYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  
Sbjct: 86  LYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAA 145

Query: 435 RAKSMKFVDGLMIHSGDPCNDYVN 506
           RAKSMKF DG M+ SG P  +Y++
Sbjct: 146 RAKSMKFKDGYMVSSGQPTKEYID 169



 Score =  137 bits (332), Expect = 6e-33
 Identities = 68/81 (83%), Positives = 73/81 (90%)
 Frame = +1

Query: 13  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 192
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 193 RIRELTSVVQKRFNIPEQSVD 255
           RIRELTS+VQKRF  P  SV+
Sbjct: 65  RIRELTSLVQKRFKFPVDSVE 85



 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 34/52 (65%), Positives = 39/52 (75%)
 Frame = +2

Query: 509 ATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 664
           A RHVLLRQGVLGIKVKIML WD  GK+GPK P PD +++  PKD+ V   P
Sbjct: 171 AVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAP 222


>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 295

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 210 SELTDSASFLSEHTLCPGGHNNDLRADGSD 121
           SEL +  + LSEH+L   GH  +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 210 SELTDSASFLSEHTLCPGGHNNDLRADGSD 121
           SEL +  + LSEH+L   GH  +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395


>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 442

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 210 SELTDSASFLSEHTLCPGGHNNDLRADGSD 121
           +EL    + LSEH++   GH  ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431


>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
           contains Pfam PF05577: Serine carboxypeptidase S28
          Length = 493

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 14  FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 136
           F RS N+    F    S S +L +W R   P   CGSL S+
Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201


>At3g42060.1 68416.m04315 myosin heavy chain-related
          Length = 712

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 224 SDSTFQSNL*IVC*KGGYSWP 286
           SD+TF SNL ++C +   SWP
Sbjct: 335 SDNTFLSNLSLLCKRSALSWP 355


>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
           identical to C2H2 zinc-finger protein SERRATE
           GI:14486602 from [Arabidopsis thaliana]
          Length = 720

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -3

Query: 288 KGHE*PPFQHTIYRLLWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRADGSDPHF- 112
           KG E      T+   LW V  L YYG   T+ A  L  H     G  +D + D ++  F 
Sbjct: 395 KGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGL-RHVRAE-GKVSDAKGDENESKFD 452

Query: 111 -HAGVAVLGQLPSE 73
            H    + GQ P E
Sbjct: 453 SHWQERLKGQDPLE 466


>At2g25150.1 68415.m03008 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase
           [gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
           III-2-O-benzoyl transferase [gi:11559716] from Taxus
           cuspidata; contains Pfam transferase family domain
           PF00248; contains EST gb:R65039
          Length = 461

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 141 LRADGSDPHFHAGVAVLGQLPSEELIEF 58
           L+   SDP    GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 387 GARGCEVVVSGKLRGQRAKSMKFVDG 464
           G+ GC+VVV   L G+ A     VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298


>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 781

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 19  KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 195
           K RK  G  + KA + E+  ++    GYSG      P+  + ++     +S+ G+K ++
Sbjct: 349 KTRKLTGIRLQKASM-EYGKKKTTRSGYSGHGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406


>At1g33811.1 68414.m04180 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 370

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -1

Query: 440 GTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFS 261
           G +  QLARYNN   +  R +++  N I    ++    KLV  R   G    A   +L S
Sbjct: 228 GCIPYQLARYNNRNNSTGRCNEKINNAI--VVFNTQVKKLVD-RLNKGQLKGAKFVYLDS 284

Query: 260 IQST 249
            +ST
Sbjct: 285 YKST 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,161,760
Number of Sequences: 28952
Number of extensions: 352560
Number of successful extensions: 1024
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)