Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11036
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 154 1e-38
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 154 1e-38
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 154 1e-38
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 66 6e-12
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 49 7e-07
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 46 6e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 27 3.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.1
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 26 7.2
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 7.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.6
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 9.6
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 9.6
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 154 bits (374), Expect = 1e-38
Identities = 70/85 (82%), Positives = 77/85 (90%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAG 282
Query: 181 ITTEVKSVEMHHEALQEAVPGDNVG 255
+TTEVKSVEMHHE+L +PGDNVG
Sbjct: 283 VTTEVKSVEMHHESLDAGLPGDNVG 307
Score = 145 bits (352), Expect = 6e-36
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +3
Query: 255 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 434
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 435 CKFAEIKEKVDRRTGKSTEVNPKSI 509
CKFAE+ EK+DRR+GK E +PK +
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFV 392
Score = 85.8 bits (203), Expect = 6e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +2
Query: 497 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 649
PK KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 389 PKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 154 bits (374), Expect = 1e-38
Identities = 70/85 (82%), Positives = 77/85 (90%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAG 282
Query: 181 ITTEVKSVEMHHEALQEAVPGDNVG 255
+TTEVKSVEMHHE+L +PGDNVG
Sbjct: 283 VTTEVKSVEMHHESLDAGLPGDNVG 307
Score = 145 bits (352), Expect = 6e-36
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +3
Query: 255 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 434
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 435 CKFAEIKEKVDRRTGKSTEVNPKSI 509
CKFAE+ EK+DRR+GK E +PK +
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFV 392
Score = 85.8 bits (203), Expect = 6e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +2
Query: 497 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 649
PK KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 389 PKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 154 bits (374), Expect = 1e-38
Identities = 70/85 (82%), Positives = 77/85 (90%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAG 282
Query: 181 ITTEVKSVEMHHEALQEAVPGDNVG 255
+TTEVKSVEMHHE+L +PGDNVG
Sbjct: 283 VTTEVKSVEMHHESLDAGLPGDNVG 307
Score = 145 bits (352), Expect = 6e-36
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +3
Query: 255 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 434
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 435 CKFAEIKEKVDRRTGKSTEVNPKSI 509
CKFAE+ EK+DRR+GK E +PK +
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFV 392
Score = 85.8 bits (203), Expect = 6e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +2
Query: 497 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 649
PK KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 389 PKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 66.1 bits (154), Expect = 6e-12
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +1
Query: 10 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT--IVVFAPAN 180
L+EA+D+ + P R TD P + ++DV+ I G GTV GRVE G LK G +V ++
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293
Query: 181 ITTEVKSVEMHHEALQEAVPGDNVGST*RTCPSRNCVVVMLLVTPKT 321
+ T V +EM + L AV GDN G R+ M++ P T
Sbjct: 294 LKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMIVAQPGT 340
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 49.2 bits (112), Expect = 7e-07
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
G L+ ALD ++PP +P KPLRL + DVY+ TV GRVE G ++ ++ +
Sbjct: 384 GPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQ 442
Query: 181 ITTEVKSVEMHHEALQE-AVPGDNV 252
VK+V + + AV GD V
Sbjct: 443 EDAYVKNVIRNSDPSSTWAVAGDTV 467
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 551 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 643
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 46.0 bits (104), Expect = 6e-06
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
G L+E LD++ R + P +P+ YK +GT+ G++E G +K + V+ P N
Sbjct: 448 GPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPIN 505
Query: 181 ITTEVKSV-EMHHEALQEAVPGDNV 252
T EV ++ + E + ++ GD V
Sbjct: 506 QTLEVTAIYDEADEEISSSICGDQV 530
Score = 45.6 bits (103), Expect = 8e-06
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +3
Query: 246 QCRFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTA 425
Q R V+ +++ GYV +KN P F AQ+ +L P ++ GY+ V+ HTA
Sbjct: 529 QVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTA 586
Query: 426 HIACKFAEIKEKVDRRTGKS 485
FA++ K+D+ KS
Sbjct: 587 VEEVSFAKLLHKLDKTNRKS 606
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 497 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 652
P G I L P+C+E F+++ +GRF +RD TVAVG V+K ++
Sbjct: 610 PMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +1
Query: 10 LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITT 189
L E + I PP + PLR L D + G + + R+ G +K G V+
Sbjct: 226 LPEIIQKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRIMEGFIKKGGKVMSVNTGRKY 285
Query: 190 EVKSVEMHHEALQE 231
EV+ V + + + E
Sbjct: 286 EVQQVGIMYPDMTE 299
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 194 TSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSC 78
+SVV+ + +T V + + VST TGTV +P +C
Sbjct: 86 SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 127 VETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGST 261
+ET +I+ +P N + S++ ++ QE PG+ G+T
Sbjct: 152 IETSDAYSSSILENSPPNKVQRLSSLDSSQDSFQEEHPGNVTGTT 196
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -3
Query: 524 LHLQTYGFWVDF-SRFTST 471
LH GFWVD+ SR+T T
Sbjct: 209 LHTDLQGFWVDYMSRYTFT 227
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 378 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIS-LEMQPLSTW 539
GQ+ + + TAH+ C+F E + + KS ++IS ++ P+S W
Sbjct: 1550 GQMPGWWYTIESNTTAHLLCQFEEACRQA-LTSSKSVRTKLRAISTIQRFPVSEW 1603
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 143 NTPVSTLPTGTVPIPPIL 90
N P S LPT VP+P I+
Sbjct: 666 NPPTSALPTVPVPLPSII 683
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 9.6
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +3
Query: 270 VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 449
+S+KEL R V N+ PK + + + + H Q+SN TP A I K E
Sbjct: 68 ISLKELERQKVGTPDSNSTPKSSNYDPFENLEILH--QLSN--TP--RDKDAVIHDKIEE 121
Query: 450 IKEKVDR-RTGKSTEVNPKSISLE-MQPLS 533
K + + + S +V K +SLE QP+S
Sbjct: 122 NKRPISQPQVSASEKVTLKDLSLEPHQPVS 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,978
Number of Sequences: 5004
Number of extensions: 71599
Number of successful extensions: 237
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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