Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11036
(808 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 151 6e-37
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.004
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 36 0.051
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 35 0.068
SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 30 1.9
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 30 2.5
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32) 29 3.4
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 3.4
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 4.4
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 29 5.9
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 7.7
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 28 7.7
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 151 bits (366), Expect = 6e-37
Identities = 69/85 (81%), Positives = 77/85 (90%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
G L E LD+ILPP+RP+ PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P+N
Sbjct: 84 GVTLFEGLDSILPPSRPSGLPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSN 143
Query: 181 ITTEVKSVEMHHEALQEAVPGDNVG 255
ITTEVKSVEMHHE+L EA+PGDNVG
Sbjct: 144 ITTEVKSVEMHHESLAEALPGDNVG 168
Score = 138 bits (333), Expect = 6e-33
Identities = 61/85 (71%), Positives = 71/85 (83%)
Frame = +3
Query: 255 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 434
FNVKNVSVK+++RG VAGD KNNPPK FTAQVIV+NHPG+I GY+PVLDCHTAHIA
Sbjct: 169 FNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIA 228
Query: 435 CKFAEIKEKVDRRTGKSTEVNPKSI 509
CKF ++ EK+DRR+GK E NPK I
Sbjct: 229 CKFDKLLEKIDRRSGKKLEDNPKMI 253
Score = 90.2 bits (214), Expect = 2e-18
Identities = 39/52 (75%), Positives = 49/52 (94%)
Frame = +2
Query: 497 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 652
PK+ K+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 250 PKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 524 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 640
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 35.5 bits (78), Expect = 0.051
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 491 SQPKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 610
++P+ K AI L +C+E F +F +GRF +RD
Sbjct: 506 TRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 35.1 bits (77), Expect = 0.068
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +1
Query: 40 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 219
P R T L + + I G GT+ G + +G + V +T +VKS++M +
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163
Query: 220 ALQEAVPGD 246
+ +A GD
Sbjct: 164 PVDKASQGD 172
>SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 444 AEIKEKVDRRTGKSTEVNPKSISLEMQPLSTWY 542
+ + EKVDR+ ST NP SL+ +P+ WY
Sbjct: 23 SSVAEKVDRKL-PSTHYNPTWNSLDKRPIPAWY 54
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 257 EPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLPTGTVPIP 99
E TLSPGT + + S +A +TT+ P T PV+TLP + P
Sbjct: 30 ETTLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLPPDSTMAP 83
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -2
Query: 255 TYIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTTDFVY 85
T ++SRYS++E + H + + S + TW Q F++ H +N + Y
Sbjct: 106 TSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLKKFHATHYHPSNARFYTY 162
>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
Length = 991
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/101 (20%), Positives = 40/101 (39%)
Frame = -3
Query: 464 NFFFDFCKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNITTTQ 285
+++ D+C F G V + ++W V ++ HN + K+ S + V G
Sbjct: 148 DYYLDYCYFMGEVSTTNDEFWSAEV-----LINHNPCTLKLDSGSKVTVVG-----DKAP 197
Query: 284 FLDGHVLYVEPTLSPGTASWRASWCISTDLTSVVMLAGAKT 162
+L+ L ++ G S I +T + G +T
Sbjct: 198 WLENRRLDKATSMFRGPGGVNLSHLIKGQITDALFSVGGRT 238
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 530 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 619
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 651 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 553
LT+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
Length = 447
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = -3
Query: 344 ICSTLRWVVFGVTSNITT-TQFLDGHVLYVEPTLSPGTASWRASWCISTDLTSVVMLAGA 168
I +T + +T ITT T + + + + + T+ +TD+TS+ M+
Sbjct: 116 IITTSTTDITSITMTITTSTTDITSKTMIITTSTTDITSITMIITTSTTDITSITMIITT 175
Query: 167 KTTMVPGFNTPVSTLPTGTVPIPPILYTS 81
TT + ++T T I I+ TS
Sbjct: 176 STTDITSITMIITTSTTDITSITMIITTS 204
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 499 GLTSVDLPVRRSTFSL-ISANLQAMWAVWQS 410
G+T++ LP ST + NLQ W +WQS
Sbjct: 2463 GITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 636 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 541
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +1
Query: 55 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 174
++P + D Y + G+GTV G G+++ ++ P
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,772,941
Number of Sequences: 59808
Number of extensions: 598112
Number of successful extensions: 2011
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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