Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11036
(808 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 144 5e-35
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 144 5e-35
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 144 5e-35
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 144 5e-35
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 78 8e-15
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 64 1e-10
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 62 6e-10
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 59 4e-09
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 52 3e-07
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 30 2.1
At5g39785.2 68418.m04819 expressed protein 30 2.1
At5g39785.1 68418.m04818 expressed protein 30 2.1
At1g71970.1 68414.m08319 expressed protein 29 2.7
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 2.7
At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma mem... 29 4.8
At2g39560.1 68415.m04853 expressed protein 29 4.8
At5g02190.1 68418.m00140 aspartyl protease family protein contai... 28 6.3
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 6.3
At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /... 28 6.3
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 28 6.3
At5g19490.1 68418.m02322 repressor protein-related similar to re... 28 8.4
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 144 bits (350), Expect = 5e-35
Identities = 66/85 (77%), Positives = 74/85 (87%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
G L+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP
Sbjct: 213 GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTG 272
Query: 181 ITTEVKSVEMHHEALQEAVPGDNVG 255
+TTEVKSVEMHHE+L EA+PGDNVG
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVG 297
Score = 134 bits (325), Expect = 5e-32
Identities = 58/83 (69%), Positives = 72/83 (86%)
Frame = +3
Query: 255 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 434
FNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357
Query: 435 CKFAEIKEKVDRRTGKSTEVNPK 503
KF+EI K+DRR+GK E PK
Sbjct: 358 VKFSEILTKIDRRSGKEIEKEPK 380
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +2
Query: 494 QPKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 652
+PK K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 144 bits (350), Expect = 5e-35
Identities = 66/85 (77%), Positives = 74/85 (87%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
G L+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP
Sbjct: 213 GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTG 272
Query: 181 ITTEVKSVEMHHEALQEAVPGDNVG 255
+TTEVKSVEMHHE+L EA+PGDNVG
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVG 297
Score = 134 bits (325), Expect = 5e-32
Identities = 58/83 (69%), Positives = 72/83 (86%)
Frame = +3
Query: 255 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 434
FNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357
Query: 435 CKFAEIKEKVDRRTGKSTEVNPK 503
KF+EI K+DRR+GK E PK
Sbjct: 358 VKFSEILTKIDRRSGKEIEKEPK 380
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +2
Query: 494 QPKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 652
+PK K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 144 bits (350), Expect = 5e-35
Identities = 66/85 (77%), Positives = 74/85 (87%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
G L+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP
Sbjct: 213 GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTG 272
Query: 181 ITTEVKSVEMHHEALQEAVPGDNVG 255
+TTEVKSVEMHHE+L EA+PGDNVG
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVG 297
Score = 134 bits (325), Expect = 5e-32
Identities = 58/83 (69%), Positives = 72/83 (86%)
Frame = +3
Query: 255 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 434
FNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357
Query: 435 CKFAEIKEKVDRRTGKSTEVNPK 503
KF+EI K+DRR+GK E PK
Sbjct: 358 VKFSEILTKIDRRSGKEIEKEPK 380
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +2
Query: 494 QPKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 652
+PK K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 144 bits (350), Expect = 5e-35
Identities = 66/85 (77%), Positives = 74/85 (87%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
G L+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP
Sbjct: 213 GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTG 272
Query: 181 ITTEVKSVEMHHEALQEAVPGDNVG 255
+TTEVKSVEMHHE+L EA+PGDNVG
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVG 297
Score = 134 bits (325), Expect = 5e-32
Identities = 58/83 (69%), Positives = 72/83 (86%)
Frame = +3
Query: 255 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 434
FNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357
Query: 435 CKFAEIKEKVDRRTGKSTEVNPK 503
KF+EI K+DRR+GK E PK
Sbjct: 358 VKFSEILTKIDRRSGKEIEKEPK 380
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +2
Query: 494 QPKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 652
+PK K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 77.8 bits (183), Expect = 8e-15
Identities = 32/52 (61%), Positives = 44/52 (84%)
Frame = +2
Query: 494 QPKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 649
+PK K+ +AAI+N+ P+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 44 EPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
Score = 72.1 bits (169), Expect = 4e-13
Identities = 31/46 (67%), Positives = 35/46 (76%)
Frame = +3
Query: 366 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 503
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPK 46
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 63.7 bits (148), Expect = 1e-10
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Frame = +1
Query: 10 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANIT 186
L++A+D +P P R T+ P L ++DV+ I G GTV GRVE G +K G V T
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRET 328
Query: 187 TE--VKSVEMHHEALQEAVPGDNVGST*RTCPSRNCVVVMLLVTP 315
V VEM + L EA+ GDNVG R + M+L P
Sbjct: 329 RSYTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 373
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 61.7 bits (143), Expect = 6e-10
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Frame = +1
Query: 10 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVF-----A 171
L++A+D +P P R DKP +P++DV+ I G GTV GR+E GV+K G V
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVGEEVEILGLREG 308
Query: 172 PANITTEVKSVEMHHEALQEAVPGDNVG 255
+ + V VEM + L GDNVG
Sbjct: 309 GVPLKSTVTGVEMFKKILDNGQAGDNVG 336
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 58.8 bits (136), Expect = 4e-09
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPV-GRVETGVLKPGTIVVFAPA 177
G CL++A+D++ P R KPL +P+ D + G V G++E G ++PG+ V+ P+
Sbjct: 447 GPCLLDAVDSVKSPDRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKVMVMPS 506
Query: 178 NITTEVKSVEMHHEALQEAVPGDNVGST*RTCPSRNCVVVMLLVTPK-----TTHLRVLQ 342
++S+E +A A GDNV + + + +L P THL L
Sbjct: 507 GDQGTIRSLERDSQACTIARAGDNVALALQGIDANQVMAGDVLCHPDFPVSVATHLE-LM 565
Query: 343 ILQLKSLCLTILVKSQTVTH 402
+L L+ IL+ SQ H
Sbjct: 566 VLVLEG-ATPILLGSQLEFH 584
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 497 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 649
P+ + +A++ + P+CVE+F E LGR +R +TVA+G + +
Sbjct: 613 PRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +1
Query: 1 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 180
G E LD+I P R + P R+P+ D +K +GTV +G+VE+G ++ G +V P
Sbjct: 310 GPSFFEVLDSIEIPPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREGDSLVVMPNK 367
Query: 181 ITTEVKSVEMHHEALQEAVPGDNV 252
+V ++ + ++ A PG+N+
Sbjct: 368 EQVKVVAIYCDEDKVKRAGPGENL 391
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 509 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 640
K+G A + + + +C+E F +FP LGRF +R +T+AVG +
Sbjct: 479 KNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
Score = 34.3 bits (75), Expect = 0.097
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 252 RFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTA 425
R + + +++ G+V S NP +F AQ+ +L + GY +L H
Sbjct: 392 RVRITGIEDEDILSGFVLS-SIVNPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAV 450
Query: 426 HIACKFAEIKEKVDRRTGK 482
C+ E+K ++D +T K
Sbjct: 451 VEECEIIELKSQIDLKTRK 469
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +1
Query: 22 LDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKS 201
++ I PP ++ PLR+ L D + G + V G+L G V FA + + EV
Sbjct: 241 IERIPPPPGISESPLRMLLFDSFFNEYKGVICYVSVVDGMLSKGDKVSFAASGQSYEVLD 300
Query: 202 VEMHHEAL 225
V + H L
Sbjct: 301 VGIMHPEL 308
>At5g39785.2 68418.m04819 expressed protein
Length = 607
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -2
Query: 786 SFETLSVNKYRSCMKNCAVNSSSYFLPL----VAFSAALVTLPPPASLKLTALM 637
+FE LS YRS +C V S S FL V F+AA P++ LT ++
Sbjct: 31 TFERLSREGYRSLSDDCGVESESSFLSSDSSPVIFTAAARKYETPSAKNLTFVL 84
>At5g39785.1 68418.m04818 expressed protein
Length = 606
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -2
Query: 786 SFETLSVNKYRSCMKNCAVNSSSYFLPL----VAFSAALVTLPPPASLKLTALM 637
+FE LS YRS +C V S S FL V F+AA P++ LT ++
Sbjct: 31 TFERLSREGYRSLSDDCGVESESSFLSSDSSPVIFTAAARKYETPSAKNLTFVL 84
>At1g71970.1 68414.m08319 expressed protein
Length = 225
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 768 VNKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPP 667
VN Y SC + CAV S +LP +A+ L P
Sbjct: 188 VNLYGSCRRTCAVTESIVYLPRARKAASYDNLLP 221
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -3
Query: 266 LYVEPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTP 135
L +EP+LS + C+S LT V ML+ A+TT++P + P
Sbjct: 426 LPLEPSLSRTLIEANETGCLSQALTVVAMLS-AETTLLPARSKP 468
>At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA10)
identical to SP|Q9SZR1 Potential calcium-transporting
ATPase 10, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 10) {Arabidopsis thaliana};
similar to SP|Q9LF79 Calcium-transporting ATPase 8,
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
8) {Arabidopsis thaliana}
Length = 1069
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 239 GTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT 138
G + WR W S DLT ++++ A ++ G T
Sbjct: 178 GRSFWRFVWEASQDLTLIILIVAAVASLALGIKT 211
>At2g39560.1 68415.m04853 expressed protein
Length = 233
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 158 MVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLS 54
+ P + TP ++ T P+ P+L SC GR+ +S
Sbjct: 144 ITPPYLTPRASPSLFTPPLTPLLMESCNGRKEEIS 178
>At5g02190.1 68418.m00140 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease
Length = 453
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 807 NEFVALFSFETLSVNKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLT 646
+ F ALF LSV Y+ C+ + + +SSS+ + S++ TL P ++T
Sbjct: 3 SRFHALFLLLVLSVRTYK-CVSSSSSSSSSFSFSSFSSSSSSQTLVLPLKTRIT 55
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 438 KFAEIKEKVDRRTGKSTEVNPKSI 509
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Salix gilgiana] GI:6714524; contains
PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 414
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -3
Query: 500 WVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWV 321
W + +S++VN +F+ VGS+ C V +LT VK + K S W+
Sbjct: 58 WDKACKSSSSSVNLIIPRGEFS--VGSLRFSGPCTNVSNLTVRVKASTDLSKYRSGGGWI 115
Query: 320 VFGVTSNITTT 288
FG + +T T
Sbjct: 116 QFGWINGLTLT 126
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 765 NKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVC 616
N R + +SSS+ PL++ S++ T P P S A + PT +C
Sbjct: 98 NNLRPRSDSATTSSSSHSQPLLSSSSSSATSPAPTS---PANVLPTGNIC 144
>At5g19490.1 68418.m02322 repressor protein-related similar to
repressor protein [Oryza sativa] GI:18481624
Length = 236
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 113 TVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMR 9
T + + +TSC RRG GR+ GR S S++
Sbjct: 92 TTQMHEVKHTSCGRGRRGRGRGRSSGRTGSGLSLK 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,404,619
Number of Sequences: 28952
Number of extensions: 403691
Number of successful extensions: 1380
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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