Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11033
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 54 2e-08
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 28 1.2
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 2.8
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.7
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 27 3.7
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 4.9
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.9
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 4.9
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 6.4
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 8.5
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.5
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 54.4 bits (125), Expect = 2e-08
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = +3
Query: 45 NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 221
+IF I ++A +L +RSL+T+ ASA PPVQ++GL+G YAS+L++AA K LD
Sbjct: 3 HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVKESKLDN 59
Query: 222 VEKELGQ 242
VEK L +
Sbjct: 60 VEKALNK 66
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 487 SQTTRSSK-RQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKR 663
S T SK LE+ + K G L ++ KV PS+IGG++V IGD +D+SV S++
Sbjct: 148 SATPLDSKILSRLESRIAKSKYGKGKLLVSNKVTPSIIGGLIVEIGDNILDVSVGSRLNN 207
Query: 664 YTELISAAV 690
+L+S +
Sbjct: 208 LNKLLSEPI 216
Score = 46.0 bits (104), Expect = 6e-06
Identities = 26/106 (24%), Positives = 49/106 (46%)
Frame = +2
Query: 185 FFSSIKDQGT*HRRKRARPVSTVFKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPT 364
+ +++K+ + K +S V + + +++I +P L R K + + P
Sbjct: 48 YTAAVKESKLDNVEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPL 107
Query: 365 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEVTCEVVTAKPLD 502
N +L +N RL L + F +M A RGE+ ++ +A PLD
Sbjct: 108 LKNFYNVLLDNHRLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLD 153
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 496 WFGCNNFTSYFTPVGSHHNLKSINDSLQFVQATI 395
W G +F + F + +H + S+N L F QA I
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQARI 294
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 320 DALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEVTC 475
+AL N+I + T + LGL+ RL + +MA H G + C
Sbjct: 5 EALHVGCNRIPTAATWSSNLGLIYGAERLIAVADPFKEINYLMAGHSGRINC 56
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 156 GLEGRYASALFSAASKTKALDIVEKELGQFQQSSKLMQSSRNSSSTR 296
G +G+ +++ +A+S +K DI+E E G F ++K + +SSS R
Sbjct: 671 GNQGQRMNSIGNASSFSKR-DIMENENGSFDTNAKNGNNVDDSSSVR 716
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = -2
Query: 447 IIILKALMTASSLSKRPFSASNPSRLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 268
+I+ ++ AS R + N + L VVGE TC+NA+ L + +++ +
Sbjct: 858 VILETGMVKASYQMDRESLSENITCLCVVGELPFFSKTCYNATVVAELDSAVWILDREGW 917
Query: 267 ASVLKTVETGRAL 229
++LK+ + +
Sbjct: 918 ETMLKSSDKAEVI 930
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 295 RVDDEFLELCISFEDC*NWPSSFSTMSSALVFDAAEKRAEAYRPSN 158
R +E L+ S N+PS + + L F +AE Y+ SN
Sbjct: 442 RSQEEHLDFIPSLTPSKNYPSKIYSPNKNLDFSHTASKAETYKNSN 487
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 399 PFSASNPSRLPVVGERLILLATCFNASTFML 307
PFS S+LPV G ILL F +T+++
Sbjct: 3 PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 186 KERKHTDLPIQILALEVLPFVLRR 115
KER+ L ++ + +VLPF+LRR
Sbjct: 1570 KERERGTLALEAIHKQVLPFMLRR 1593
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 72 ALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQ 251
+LK + S+ + A+ VKP ++ E R SAA + DIV + +Q
Sbjct: 272 SLKSTIFFLSIPSLEATPITVKPESEMGDWESRNVWKEVSAALASGNYDIVSSKKSTIEQ 331
Query: 252 SSKLMQSSRNS 284
S + M+ +
Sbjct: 332 SQRDMRKKEEA 342
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 332 HVANKISLSPTTGNLLGLLAENGRLDKLEAV 424
++ + +S+ P TGN + NG+ + LEA+
Sbjct: 214 NLTDAVSIEPGTGNKFTINFNNGKSETLEAL 244
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -2
Query: 450 AIIILKALMTASSLSKRPFSASNPSRLPVVGERLILLATCFNASTFMLLFNVGLMMNSLS 271
A+I+ + +T ++ + P SN V ERL F + + N GL+M+ L+
Sbjct: 206 AVILHFSFVTVDAIPESPHLVSNRKGPEGVVERLYNRIPWFLTRQVLRVGNAGLLMSGLT 265
Query: 270 FASVLK 253
++K
Sbjct: 266 RLFLMK 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,620
Number of Sequences: 5004
Number of extensions: 59340
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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