Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11033
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 53 3e-07
02_05_0759 + 31545473-31546204 36 0.025
05_07_0140 - 27982037-27983794 31 1.3
02_04_0538 + 23739830-23740126,23740205-23740261,23740344-237404... 31 1.3
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499 30 2.2
10_08_0133 + 15100049-15101836,15103344-15103382 29 3.9
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423 29 5.1
06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241... 28 8.9
03_06_0618 - 35132077-35132830,35133690-35135212 28 8.9
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/102 (29%), Positives = 50/102 (49%)
Frame = +2
Query: 236 RPVSTVFKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKL 415
R V K +FI + ++ + +V A+ + + S T N L +LA+NGRL +
Sbjct: 72 RDVVEASKKSPLFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHI 131
Query: 416 EAVINAFKIMMAAHRGEVTCEVVTAKPLDQARGKIWKQRLRN 541
+ + F + AH+GEV V T PL + K K+ L++
Sbjct: 132 DRIAERFVDLTMAHKGEVKVLVRTVIPLPEKEEKELKETLQD 173
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/52 (32%), Positives = 33/52 (63%)
Frame = +1
Query: 508 KRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKR 663
+ + L+ L+ L N+T+ + K+D S++GG+V+ G K DMS+ ++ K+
Sbjct: 163 EEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQKVFDMSIKTRAKQ 214
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 96 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSSK 260
R ++ VA + + +K P ++G G YASALF A+K LD VE E+ ++SK
Sbjct: 23 RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASK 79
>02_05_0759 + 31545473-31546204
Length = 243
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 251 VFKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVIN 430
+F +A + EF NPT+ R K + +A L N L ++ +NGR + ++
Sbjct: 91 IFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSSELQAHVVNFLNVVVDNGRAGLMTQIVR 149
Query: 431 AFKIMMAAHRGEVTCEVVTAKPLD 502
F+ + G V + L+
Sbjct: 150 EFENAFNSLTGTEVATVTSVVQLE 173
>05_07_0140 - 27982037-27983794
Length = 585
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = +2
Query: 179 RSFFSSIKDQGT*HRRKRARPVSTVFKTDAKLKEFIINPTLKRSMKVDALKHVANKISLS 358
R+FF RR +TVF TDA L + P S + ++ V NK+
Sbjct: 226 RNFFKVTTTDDPVIRRLAEEDKATVFATDAILAALMCTPRSIHSWDI-VVQRVGNKLFFD 284
Query: 359 PTTGNLLGLLAEN 397
G+ L LL+ N
Sbjct: 285 KRDGSQLDLLSVN 297
>02_04_0538 +
23739830-23740126,23740205-23740261,23740344-23740441,
23740565-23740640,23741316-23741345,23741833-23741961,
23742077-23742123,23742477-23742531,23742939-23743038,
23743568-23743674,23743760-23743906,23744232-23744378,
23744473-23744526,23744873-23744914
Length = 461
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 686 AALISSVYLLTLLATLMSTYLSPIETTMPPINEGSTLAVSCR 561
A L++++ LL L + S+ SP ++ PP + +T A SCR
Sbjct: 29 ALLVAALLLLFLDQAVQSSTKSPASSSSPPPSPTTTAAASCR 70
>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
Length = 454
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 453 AAIIILKALMTASSLSKRPFSASNPSRLPVVG 358
AA+ +L+ A+++ +RP + P RLPV+G
Sbjct: 15 AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46
>10_08_0133 + 15100049-15101836,15103344-15103382
Length = 608
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = -2
Query: 273 SFASVLKTVETGRALFRRCQVPWSLMLLKKERKHTDLPIQILALEVLPFVLRRHLCSKSE 94
+F SVL+ +E L RR +P + KER P + A+ + P VL HLCS++
Sbjct: 344 AFWSVLRALELPLWLPRRLTIPDA----SKER--WSKPAAVTAVTMAP-VLLSHLCSRAT 396
Query: 93 PADSPL 76
SPL
Sbjct: 397 GITSPL 402
>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
Length = 529
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 505 SKRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIG---DKYVDMSVASKV 657
+++ L A + + G +L + VDPSLI G VV G +D+SV K+
Sbjct: 457 ARQTELIARKMRRITGFASLTIENVVDPSLIAGFVVCYGPGESHVIDLSVKGKL 510
>06_01_0335 +
2412766-2415655,2416108-2416208,2416871-2416895,
2416977-2417049,2417191-2417373,2418164-2418227,
2418427-2418447,2418862-2418905,2420575-2420650,
2421359-2421373
Length = 1163
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -1
Query: 373 ITSCRRKTDLIGDMFQRIYLHASF*CRVDDEFLELCISFEDC*NWPSSFSTMSSALVFDA 194
I SCR D+I D+ I F CR+DD+ E C+ E+ + + +++ SS + D
Sbjct: 455 IKSCRVH-DIIRDIMISISREEKFVCRIDDK--ETCLMEENI-HHVAFYNSNSSEIAMDL 510
Query: 193 AEKRA 179
+ R+
Sbjct: 511 NQVRS 515
>03_06_0618 - 35132077-35132830,35133690-35135212
Length = 758
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = -2
Query: 375 RLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSFASVLKTVETGRALFRRCQVPWS 202
R +GE+L+ L F+AS++++L+N+ + +S A + + R + + W+
Sbjct: 573 RCTKIGEKLMELEP-FSASSYVMLYNLYMDAGKISLAMRTRGLMRERGISNEAGISWT 629
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,745,508
Number of Sequences: 37544
Number of extensions: 374413
Number of successful extensions: 1036
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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