Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11033
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15670| Best HMM Match : OSCP (HMM E-Value=3.6e-06)                  68   7e-12
SB_48397| Best HMM Match : TPR_2 (HMM E-Value=6.6e-26)                 31   0.97 
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    30   1.7  
SB_4814| Best HMM Match : NTP_transf_2 (HMM E-Value=0.6)               29   3.0  
SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.9  
SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)             29   5.2  
SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 28   6.9  

>SB_15670| Best HMM Match : OSCP (HMM E-Value=3.6e-06)
          Length = 154

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 32/84 (38%), Positives = 49/84 (58%)
 Frame = +2

Query: 242 VSTVFKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEA 421
           + ++ K   +L +FI+NPT+ ++ K   L  +      S  T NLL  +AEN RL  + +
Sbjct: 71  LESMMKKSERLSDFIVNPTMNKTKKQSGLTQLLKDQKFSDLTINLLSAMAENNRLGYINS 130

Query: 422 VINAFKIMMAAHRGEVTCEVVTAK 493
           V NAF  +M+A RGE+ C V +AK
Sbjct: 131 VANAFSKIMSAARGEIICSVTSAK 154



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 34/70 (48%), Positives = 48/70 (68%)
 Frame = +3

Query: 51  FLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEK 230
           FL K  S L  N    SLS++ ++A+ VKPP+Q+FG+EGRYA A++SAA+K+K L+ VE 
Sbjct: 9   FLQK--SPLLNNARQLSLSSTRSAAEFVKPPIQIFGIEGRYAHAVYSAAAKSKQLETVES 66

Query: 231 ELGQFQQSSK 260
           EL   +   K
Sbjct: 67  ELKNLESMMK 76


>SB_48397| Best HMM Match : TPR_2 (HMM E-Value=6.6e-26)
          Length = 598

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +2

Query: 308 SMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEVTCEVVT 487
           SM++   K  ANK +++   GN+  + AE+G   + E V +   + +A +  +  CE+V+
Sbjct: 383 SMELRIAKKFANKTAMAYAYGNIANVHAESGNFAQAE-VNHEQHLKLAKNLNDRVCELVS 441

Query: 488 AK 493
            K
Sbjct: 442 IK 443


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 120 SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVE 227
           SA + KPP Q  GL+ R+ SA F+AA     LD+ +
Sbjct: 460 SAAVTKPPAQTAGLQ-RHESAGFNAADILSNLDVTQ 494


>SB_4814| Best HMM Match : NTP_transf_2 (HMM E-Value=0.6)
          Length = 426

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 492 LAVTTSQVTSPRWAAIIILKALMTASSLSKRPFSASNPSRLPVVGERL 349
           +  T+   T  +W A+   KA+ +  S  K+  +     RLP VGERL
Sbjct: 115 ILATSYANTKDQWRALGYKKAISSIKSYHKKIETEEECHRLPFVGERL 162


>SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 431

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 408 SKRPFSA-SNPSRL-PVVGERLILLATCFNASTFMLLFNVGLMMNSLSFASVLKTVETGR 235
           S  P S  S P+R+ P + E L + A  F  S ++L+F +  ++NS+    VLK   T  
Sbjct: 41  STSPLSTNSTPARVQPCLTEWLGIWALVFLTSGYILIFAIATLVNSIIIYVVLKYRNTKT 100

Query: 234 A 232
           A
Sbjct: 101 A 101


>SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)
          Length = 454

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 332 HVANKISLSPTTGNLLGLLAENGRLDKLEAVINA 433
           HV +++ + P++GNL+  L EN +L  L  V+N+
Sbjct: 113 HVIDRV-IFPSSGNLMSYLNENPQLSMLYEVLNS 145


>SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +3

Query: 30  LLTCANIFLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTK 209
           L+TC +I+           L V  LS+S+ ++  VKP V      GR    L+ A S  K
Sbjct: 153 LVTCGSIYHGVCQLRDLNTLSVTELSSSITASSNVKPAVGFIAPGGR-DEVLYFATSWRK 211

Query: 210 A 212
           A
Sbjct: 212 A 212


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 689 TAALISSVYLLTLLATLMSTYLSPIE-TTMPPINEGSTLAVSCR-VSLPFR 543
           +A  I  V LLT++  L+   LSPIE +   P    S+   S R +SLPFR
Sbjct: 26  SACFIVIVMLLTIMGNLLCVLLSPIEKSNKLPCRVISSERPSGRTLSLPFR 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,709,612
Number of Sequences: 59808
Number of extensions: 439942
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)