Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11033
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 94 8e-20
U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 94 8e-20
U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical pr... 35 0.052
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr... 31 0.85
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ... 31 0.85
AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical ... 30 1.5
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical ... 28 6.0
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 28 6.0
AF016670-6|AAB66103.2| 839|Caenorhabditis elegans Hypothetical ... 28 7.9
>U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform a protein.
Length = 207
Score = 94.3 bits (224), Expect = 8e-20
Identities = 42/92 (45%), Positives = 68/92 (73%)
Frame = +2
Query: 242 VSTVFKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEA 421
V +V+K + K +EF+++PTLK + K A++ ++ K+ L+ TGN LGLLAENGRL+KLE+
Sbjct: 58 VRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLES 117
Query: 422 VINAFKIMMAAHRGEVTCEVVTAKPLDQARGK 517
V+++F+ +M AHRGE+ +V +A+ L + K
Sbjct: 118 VVSSFESIMRAHRGELFVQVTSAEELSSSNQK 149
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = +1
Query: 502 SSKRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKRYTELIS 681
SS ++ L AL K K + L +T V PS++GG+VV+IGDKYVD+S+AS+VK+Y + ++
Sbjct: 145 SSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVVTIGDKYVDLSIASRVKKYKDALA 204
Query: 682 AAV 690
A+
Sbjct: 205 TAI 207
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +3
Query: 87 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSSK 260
L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD + +L + K
Sbjct: 4 LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYK 63
>U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform b protein.
Length = 228
Score = 94.3 bits (224), Expect = 8e-20
Identities = 42/92 (45%), Positives = 68/92 (73%)
Frame = +2
Query: 242 VSTVFKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEA 421
V +V+K + K +EF+++PTLK + K A++ ++ K+ L+ TGN LGLLAENGRL+KLE+
Sbjct: 79 VRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLES 138
Query: 422 VINAFKIMMAAHRGEVTCEVVTAKPLDQARGK 517
V+++F+ +M AHRGE+ +V +A+ L + K
Sbjct: 139 VVSSFESIMRAHRGELFVQVTSAEELSSSNQK 170
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = +1
Query: 502 SSKRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKRYTELIS 681
SS ++ L AL K K + L +T V PS++GG+VV+IGDKYVD+S+AS+VK+Y + ++
Sbjct: 166 SSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVVTIGDKYVDLSIASRVKKYKDALA 225
Query: 682 AAV 690
A+
Sbjct: 226 TAI 228
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +3
Query: 48 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 221
++L + + L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD
Sbjct: 12 LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQ 71
Query: 222 VEKELGQFQQSSK 260
+ +L + K
Sbjct: 72 ISTDLNNVRSVYK 84
>U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical
protein T07H6.4 protein.
Length = 702
Score = 35.1 bits (77), Expect = 0.052
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Frame = -2
Query: 399 PFSASNPSRLPVVGERLILLATCFNASTFMLL----FNVGLMM--NSLSFASVLKTVETG 238
PF +S PS+L +++ + C +L F + L++ N LS S+ TV
Sbjct: 384 PFPSSRPSKLT---KKMFIFTDCIFKFVLQILWCKTFKLVLLLFVNILSLKSLPLTVRIR 440
Query: 237 RALFR-RCQVPWSLMLLKKERKHTDLPIQILALEVLPFVLRRHLCSKSEP 91
R+ R + ++ L LK++ ++ P ++ + + P+++RR+ CS P
Sbjct: 441 RSGQRQKLEITMILTDLKRKMPTSNWPDKLTSRSIEPYIVRRNCCSVFVP 490
>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical
protein F26H9.8 protein.
Length = 1377
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +1
Query: 499 RSSKRQNLEAALKKFL-KGNETLQ---LTAKVDPSLIGGMVVSIGDKYVDM-SVASKVKR 663
R + QNL L++ + KG ETL+ + + + I G V++ GD +VD+ ++ KV+
Sbjct: 318 RVTSHQNLNETLQRSIQKGQETLEAKGIESGTNILAINGRVIAKGDSFVDLFALMEKVEE 377
Query: 664 YTELISAAV 690
++++ V
Sbjct: 378 EKKMVNEFV 386
>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical
protein F26H9.8 protein.
Length = 1377
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +1
Query: 499 RSSKRQNLEAALKKFL-KGNETLQ---LTAKVDPSLIGGMVVSIGDKYVDM-SVASKVKR 663
R + QNL L++ + KG ETL+ + + + I G V++ GD +VD+ ++ KV+
Sbjct: 318 RVTSHQNLNETLQRSIQKGQETLEAKGIESGTNILAINGRVIAKGDSFVDLFALMEKVEE 377
Query: 664 YTELISAAV 690
++++ V
Sbjct: 378 EKKMVNEFV 386
>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
protein K02F6.4 protein.
Length = 1193
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 505 SKRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVS 615
SK QNL ++KK L G T + T +DP+ + ++ S
Sbjct: 576 SKLQNLYFSVKKSLDGKRTRRATGSIDPTKLPNLLAS 612
>AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical
protein F59H5.1 protein.
Length = 758
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 478 SCYSQTTRSSKRQNLEAALKKFLKGNETLQL 570
S Y+ T +SSKR N K F K +E+LQL
Sbjct: 54 SPYTSTPKSSKRVNKTRGTKDFFKKDESLQL 84
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 381 PSRLPVVGERLILLATCFNASTFMLLFN 298
P+ PV+GE ++ ATCF F L N
Sbjct: 51 PTWYPVMGEAWVIRATCFGVLVFNLYSN 78
>AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical
protein K10G6.4 protein.
Length = 455
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 221 RRKRARPVSTVFKTDAKLKEFIINPTLKRSMKVDALKH 334
R+++A+ V K D KLK+ ++N + S + + L+H
Sbjct: 146 RKEKAKEVEMRMKYDQKLKDIVMNKEKRVSPRFEHLEH 183
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 238 PSSFSTMSSALVFDAAEKRAEAYRPSNPNTCTGGF 134
PS+ S MSS EK+A+ Y+ P GGF
Sbjct: 808 PSNVSNMSSRAELAGYEKQADEYKRHEPWYTVGGF 842
>AF016670-6|AAB66103.2| 839|Caenorhabditis elegans Hypothetical
protein K02F6.3 protein.
Length = 839
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 505 SKRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVS 615
SK QNL ++KK L T + T +DP+ + ++ S
Sbjct: 582 SKLQNLYFSVKKSLDEKRTRRATGSIDPAKLPNLLAS 618
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,334
Number of Sequences: 27780
Number of extensions: 337994
Number of successful extensions: 922
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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