Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11033
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.0  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.1  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 372 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 268
           LP V + + LL + FN   FM+  +V L +  L+F
Sbjct: 315 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNF 349


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 372 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 268
           LP V + + LL + FN   FM+  +V L +  L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 372 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 268
           LP V + + LL + FN   FM+  +V L +  L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 372 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 268
           LP V + + LL + FN   FM+  +V L +  L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 224 RKRARPVSTVFKTDAKLKEFIINPTLKRSMKVD 322
           R+R R   T F+T    KEF  N  L R  +++
Sbjct: 8   RRRGRQTYTRFQTLELEKEFHYNHYLTRRRRIE 40


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 224 RKRARPVSTVFKTDAKLKEFIINPTLKRSMKVD 322
           RKR R   T ++T    KEF  N  L R  +++
Sbjct: 8   RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE 40


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 224 RKRARPVSTVFKTDAKLKEFIINPTLKRSMKVD 322
           RKR R   T ++T    KEF  N  L R  +++
Sbjct: 270 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE 302


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 372 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 268
           +P   + + L+ + FN   FM+  +V L +  L+F
Sbjct: 315 MPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLNF 349


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = +3

Query: 30  LLTCANIFLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYA 176
           +L C  +FL + +      LLV    + +  A +V P   ++ + G ++
Sbjct: 60  ILVCVAVFLVRKLRRPCNYLLVSLAVSDLCVALLVMPMALLYEISGNWS 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,520
Number of Sequences: 438
Number of extensions: 3757
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)