Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11033
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial...    60   2e-09
At4g20980.1 68417.m03037 eukaryotic translation initiation facto...    29   4.3  
At2g39040.1 68415.m04799 peroxidase, putative similar to cationi...    28   7.4  

>At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial,
           putative / H(+)-transporting two-sector ATPase, delta
           (OSCP) subunit, putative identical to SP|Q96251; similar
           to SP|P22778 ATP synthase delta chain, mitochondrial
           precursor (EC 3.6.3.14) (Oligomycin sensitivity
           conferral protein) (OSCP) {Ipomoea batatas}; contains
           Pfam profile PF00213: ATP synthase F1, delta subunit
          Length = 238

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 34/108 (31%), Positives = 56/108 (51%)
 Frame = +2

Query: 257 KTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAF 436
           KT     +F  +P++ R  ++ A++   ++   +  T N L LLAENG+L  L+A++  F
Sbjct: 89  KTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKF 148

Query: 437 KIMMAAHRGEVTCEVVTAKPLDQARGKIWKQRLRNS*RAMKLCSLQLK 580
             +  AHRG+V   V T  PL  A  K   + L+    A K  +++ K
Sbjct: 149 MQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQK 196



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/62 (24%), Positives = 35/62 (56%)
 Frame = +1

Query: 505 SKRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKRYTELISA 684
           ++ + L   L++ +   + + +  K+DPS+ GG++V    K +DMS+ ++ ++   L+  
Sbjct: 172 AEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLRE 231

Query: 685 AV 690
            V
Sbjct: 232 PV 233


>At4g20980.1 68417.m03037 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 591

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +2

Query: 179 RSFFSSIKDQGT*HRRKRARPVSTVFKTDAKLKEFIINPTLKRSMKVDALKHVANKISLS 358
           R+FF          RR      +TVF TDA L   +  P    S  +  ++ V NK+   
Sbjct: 245 RNFFKVTTSDDPVIRRLAKEDKATVFATDAILAALMCAPRSVYSWDI-VIQRVGNKLFFD 303

Query: 359 PTTGNLLGLLA 391
              G+ L LL+
Sbjct: 304 KRDGSQLDLLS 314


>At2g39040.1 68415.m04799 peroxidase, putative similar to cationic
           peroxidase isozyme 38K precursor [Nicotiana tabacum]
           gi|575603|dbj|BAA07663
          Length = 350

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 214 SALVFDAAEKRAEAYRPSNPNTCTGGFTICAEATLVLKERTSRFPFKADII 62
           ++L+ D+   +A + + + PN    GF I  E   +L++R       ADI+
Sbjct: 95  ASLLLDSVAGKAVSEKEARPNLSLSGFEIIDEIKYILEKRCPNTVSCADIL 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,389,064
Number of Sequences: 28952
Number of extensions: 309937
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)