Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11031X
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 109 1e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 98 5e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 8e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 75 4e-14
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.25
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 27 7.2
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 9.6
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 27 9.6
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 27 9.6
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 109 bits (262), Expect = 1e-24
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGDRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+D+ L +F+T +T++DAPG +DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 437 TREHALLAFTLGVKQLIVGVNKMD 508
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 97.9 bits (233), Expect = 5e-21
Identities = 42/84 (50%), Positives = 60/84 (71%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGDRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+++ F+T + T++DAPG + F+ NMI+G +QAD VL+++A GEFE G + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269
Query: 437 TREHALLAFTLGVKQLIVGVNKMD 508
TREHA+LA T GVK L++ VNKMD
Sbjct: 270 TREHAMLAKTAGVKHLVILVNKMD 293
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 8e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 74.9 bits (176), Expect = 4e-14
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +2
Query: 245 RWYPIDIALWKFETSKYYVTIIDAPGDRDFIKNMITGTSQ 364
R IDIALWKFET KYYVT+IDAPG RDFIKNMITGTSQ
Sbjct: 21 RGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 187 MGKGSFKYAWVLDKLKAERE 246
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 30.7 bits (66), Expect = 0.78
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +2
Query: 299 VTIIDAPGDRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 478
+T ID PG F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 479 QLIVGVNKMD 508
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 58 THINIVVIGHVDSGKSTTTGHLIY 129
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 165
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +1
Query: 70 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE--- 240
IV + D G +I GG+ K IE KEA++ + + ++KLK E
Sbjct: 291 IVNVSARDKGTGREQQIVIQSSGGLSKDAIENMIKEAEKYAEADKQKK--VEKLKEEIAK 348
Query: 241 -REVVSNR 261
REV++N+
Sbjct: 349 VREVLANK 356
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 274 PESNIDWIPPHAQPLVCPIPKHI*RILYP 188
P S + IPP P P+PK R++YP
Sbjct: 955 PGSVVPTIPPVTVPTKRPVPKPYARVVYP 983
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -1
Query: 376 SAISLRGSCDHVLDEISVPRSINDGNIVLASFELPESNIDWIPPHAQPLVCPIPKHI 206
++++ G+ + + S N G + +F PES D PH +P++ P+P+ I
Sbjct: 1897 ASVAGAGTSPFISSDGSAKPFANAGAKLFEAFGSPESGQDIEEPHFEPII-PLPEKI 1952
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 40 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 213
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 27.1 bits (57), Expect = 9.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 262 IDWIPPHAQPLVCPIPKH 209
+DWIP + + VC +P H
Sbjct: 247 VDWIPNNGKVAVCDVPPH 264
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 350 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDPLNHHT 526
TGT+ D + + G+F++ ++ N + LLA +G+ + G+ ++ HT
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHT 847
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTTGHLIY 129
+ + V+G+VD+GKST G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,138,026
Number of Sequences: 59808
Number of extensions: 328171
Number of successful extensions: 809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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