Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11030
         (782 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2LCS1 Cluster: ORF845; n=1; Dictyostelium citrinum|Rep...    36   0.86 
UniRef50_Q54HB1 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_A5E617 Cluster: Predicted protein; n=1; Lodderomyces el...    34   4.6  
UniRef50_O13663 Cluster: ORF YLL031c; n=1; Schizosaccharomyces p...    33   6.1  

>UniRef50_Q2LCS1 Cluster: ORF845; n=1; Dictyostelium citrinum|Rep:
           ORF845 - Dictyostelium citrinum
          Length = 844

 Score = 36.3 bits (80), Expect = 0.86
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = +2

Query: 194 LTFSKLIRIHISYIKS-RAAFLKRFGRY**CKTHNNRYIREIKTSTIDYNNETRQLYNSH 370
           L +S L   HI + K  R +  KR+  Y   +  N RY +  K S+ +     +Q  NS+
Sbjct: 241 LWYSVLFAPHIQHKKKKRVSIFKRY--YQTQRRKNQRYQKNKKFSSNNSQQYNKQ--NSN 296

Query: 371 YETQRVHYVSKLLQY*IILIVVHKNRTVQRKD 466
           Y+T R +++ K LQY + L      RT +RK+
Sbjct: 297 YKTSRQYFIKKRLQY-LSLDRSKVKRTKKRKN 327


>UniRef50_Q54HB1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 53

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +3

Query: 501 KQSQIN*LCILLWIYCIFFFLYY 569
           K++QIN L I+L+IY IFFFL+Y
Sbjct: 6   KRNQINRLIIILFIYFIFFFLFY 28


>UniRef50_A5E617 Cluster: Predicted protein; n=1; Lodderomyces
           elongisporus NRRL YB-4239|Rep: Predicted protein -
           Lodderomyces elongisporus (Yeast) (Saccharomyces
           elongisporus)
          Length = 301

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 416 NIVIILRHNGPVVFHNANYIVDEFRYCNQLCLF*FHECNGCYEFCIIN 273
           N +++L+ NGP++ H+ NY +     C Q     FH  + C  F   N
Sbjct: 138 NSILVLKCNGPILVHDINYCIVVILQCQQAR---FHNSSNCIVFMAKN 182


>UniRef50_O13663 Cluster: ORF YLL031c; n=1; Schizosaccharomyces
           pombe|Rep: ORF YLL031c - Schizosaccharomyces pombe
           (Fission yeast)
          Length = 918

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = -1

Query: 500 YFYFSRVW*NYDLFSVLSCFCVLLLKLFNIVIILRHNGPVVFHNANYIVDEFRYCNQLCL 321
           + YF  +W  + LF ++  F +L++  FN+ ++++    V+F  +  +      C  +CL
Sbjct: 417 FSYFKAIWAEFSLFPMIIGFLLLIIGGFNLALLMQDKS-VIFRMSANMAPSVMKCLPVCL 475


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,746,667
Number of Sequences: 1657284
Number of extensions: 10973564
Number of successful extensions: 25663
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25649
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)