Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11030
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.8  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   4.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 306 FVKLKQAQLITITKLVNYIIRIMKHNGSIMSQN 404
           F KLKQA++    +  N+I + +K  G I++ N
Sbjct: 479 FEKLKQARMTINLEKSNFIQKEVKFLGHILTIN 511


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 525 CILLWIYCIFFFLY 566
           C+L+ + CI++F Y
Sbjct: 230 CVLIILLCIYYFYY 243


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 634 LNVSLIHSTTTQGNMSLKYKS 696
           LN SLIHST   G++  ++++
Sbjct: 194 LNTSLIHSTHLNGDIVKEHQN 214


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 777 PSERDLIIVLSSSNVCKKFK 718
           P+ERDLI+ L   ++  +F+
Sbjct: 23  PTERDLIVTLDDRDLWLRFE 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,291
Number of Sequences: 336
Number of extensions: 3459
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)