Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11030
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    33   0.035
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.3  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    27   2.3  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    27   3.0  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = -1

Query: 500 YFYFSRVW*NYDLFSVLSCFCVLLLKLFNIVIILRHNGPVVFHNANYIVDEFRYCNQLCL 321
           + YF  +W  + LF ++  F +L++  FN+ ++++    V+F  +  +      C  +CL
Sbjct: 417 FSYFKAIWAEFSLFPMIIGFLLLIIGGFNLALLMQDKS-VIFRMSANMAPSVMKCLPVCL 475


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 314 FHECNGCYEFCIINSDRIALRTRLLT 237
           F ECN CY    + S+RI +  RL +
Sbjct: 29  FFECNPCYSIEKLKSNRILIAVRLFS 54


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 559 FFIMIKVIHTR*TVSTMNTNRGSLLLNVSLIHSTT 663
           FF+ + +I TR   + MNT  G  L++ SL    T
Sbjct: 15  FFVYLLIISTRLVAADMNTQYGCYLVDSSLTEQGT 49


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 473 NYDLFSVLSCFCVLLLKLFNIVIILRHNGPVVFHNANYIVDEFRYC 336
           N D    L+ +C+L    F+++  L  N  + F NA+++  E RYC
Sbjct: 215 NADSLLNLTIYCILCYPGFHLISHL--NFVLRFRNADFLSGEQRYC 258


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 576 SYTYPINCFNYEHKSWLASIKCFTDTQYY 662
           SY YP + F   H  W      +TDT Y+
Sbjct: 193 SYFYPQDSFLVSHAEWQDGNGIWTDTDYF 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,268
Number of Sequences: 5004
Number of extensions: 52513
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)