Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11030
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_10291| Best HMM Match : Ataxin-2_N (HMM E-Value=8) 29 4.2
SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15) 28 7.4
>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 302 YIREIKTSTIDYNNETRQLYNSHYETQRVHYVSKLLQY 415
YI E T +YN E YN+ Y T+ Y + +Y
Sbjct: 479 YITEYNTDYTEYNTEYNTEYNTEYNTEYTEYNTDYTEY 516
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 290 HNNRYIREIKTSTIDYNNETRQLYNSHYETQ 382
+N YI E T +YN E YN+ Y T+
Sbjct: 540 YNTEYITEYNTDYTEYNTEYNNEYNTEYNTE 570
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 290 HNNRYIREIKTSTIDYNNETRQLYNSHYETQRVHYVSKLL 409
+N Y E +YN E YN+ Y T+ Y+++ +
Sbjct: 441 YNTEYNNEYNNEYTEYNTEYNTEYNTEYNTEYTEYITEYI 480
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 290 HNNRYIREIKTSTIDYNNETRQLYNSHYETQ-RVHYVSKLLQY 415
+NN Y E +YNN+ YN+ Y T+ Y ++ +Y
Sbjct: 249 YNNEYNTEYNNEYNEYNNDYNTEYNNEYNTEYNTEYNTEYTEY 291
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 290 HNNRYIREIKTS-TIDYNNETRQLYNSHYETQRVHYVSKLL 409
+N Y E T +YN E YN+ Y T+ Y+++ +
Sbjct: 370 YNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYITEYI 410
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 290 HNNRYIREIKTS-TIDYNNETRQLYNSHYETQRVHYVSKLL 409
+N Y E T +YN E YN+ Y T Y+++ +
Sbjct: 591 YNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTDYTEYITEYI 631
>SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 290 HNNRYIREIKTSTIDYNNETRQLYNSHYETQ 382
+N Y E T I+YN E YN+ Y T+
Sbjct: 136 YNTEYNTEYNTEYIEYNTEYNTEYNTEYNTE 166
>SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 290 HNNRYIREIKTSTIDYNNETRQLYNSHYETQRVHYVSKLL 409
+NN Y +YN E YN+ Y T+ Y+++ +
Sbjct: 103 YNNEYTEYNTDYNTEYNTEYNTEYNTEYNTEYTEYITEYI 142
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +2
Query: 290 HNNRYIREIKTSTIDYNNETRQLYNSHYETQ-RVHYVSKLLQY 415
+N Y E DYN E YN+ Y T+ Y + +Y
Sbjct: 99 YNTEYNNEYTEYNTDYNTEYNTEYNTEYNTEYNTEYTEYITEY 141
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 290 HNNRYIREIKTS-TIDYNNETRQLYNSHYETQRVHY 394
+N Y E T +YNNE YN+ Y T Y
Sbjct: 29 YNTEYNTEYNTEYNTEYNNEYNTEYNTEYNTDYTEY 64
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 290 HNNRYIREIKTSTIDYNNETRQLYNSHYETQ 382
+N Y E T +YN E YN+ Y T+
Sbjct: 64 YNTEYNTEYNTEHTEYNTEYNTEYNTEYNTE 94
>SB_10291| Best HMM Match : Ataxin-2_N (HMM E-Value=8)
Length = 266
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 290 HNNRYIREIKTSTIDYNNETRQLYNSHYETQRVHYVSK 403
+N Y + T +YN E YN+ Y T+ Y ++
Sbjct: 104 YNTEYNTDYNTEYTEYNTEYNTEYNTEYNTEYTEYYTE 141
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +2
Query: 290 HNNRYIREIKTSTIDYNNETRQLYNSHYETQRVHYVSKLLQY 415
+N Y E T +YN E YN+ Y Y + +Y
Sbjct: 27 YNTEYNTEYNTDYTEYNTEYNTEYNTKYTVYNTEYNTDYTEY 68
>SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15)
Length = 456
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 456 REKIIISPHSGKIKIKQSQIN*LCILLWIYCIFFFL 563
R +I P K+K+K+ ++ + L WIY + F L
Sbjct: 266 RYMAVIHPFFYKVKVKRERVKFVVALTWIYSLAFNL 301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,104,367
Number of Sequences: 59808
Number of extensions: 344576
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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