Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11030
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -1

Query: 506 LFYFYFSRVW*NYDLFSVLSCFCVLLLKLFNIVIILRHNGPVVFHNANYIVDEFR--YCN 333
           L + +F  V       ++L+ FC  L    +IV +L      V++ +NY    +   +C+
Sbjct: 77  LVFIFFDYVLVRIPSTTILTYFCATLDPAESIVPLL----VAVYYFSNYSSQLYTVLFCS 132

Query: 332 QLCLF*FHECNGCYEFCII 276
              L  F+E N  Y+ CI+
Sbjct: 133 TRTLILFNEKNKIYQLCIL 151


>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 449 SCFCVLLLKLFNIVIILRHNGPVVFHNA--NYIVDEFRY---CNQLCLF*FHECNGCYEF 285
           +CF VL+  L++  + +   GP   H+A  N I   +++   C+ +     H C  C + 
Sbjct: 66  TCFGVLVFNLYSNWVYMIKTGPNGHHSALPNVIKPGYKHCHSCHSMSPLRAHHCPVC-DV 124

Query: 284 CIINSD 267
           CI+  D
Sbjct: 125 CILRRD 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,897,552
Number of Sequences: 27780
Number of extensions: 291979
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)