Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11028
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 33 0.16
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 31 1.1
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 30 1.5
11_06_0260 - 21761145-21762416 30 1.5
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 29 4.6
01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847 28 6.1
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 28 6.1
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 358 LASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHA-LRGVG-RW 531
L S+ SY Y +YF+ +GFAK F++ SD+ + LIK+ +RG R
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRL 189
Query: 532 TSRVTP 549
S VTP
Sbjct: 190 QSIVTP 195
>09_06_0147 +
21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 30.7 bits (66), Expect = 1.1
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Frame = +3
Query: 240 KTHAIERRPR-MQTDFKSAALQRVLRPIQG-QPRCSERTEGISLTVFETFLPLSPVGLLL 413
K HA++ R +Q D ++ R ++P + Q S+ +E +S+ PLS G L+
Sbjct: 457 KWHAVQAGLRNLQGDIDNSVPSRQVKPSKEVQQYPSQDSEQVSIRPVAQE-PLSMDGQLV 515
Query: 414 QQLPDEQGRIREALQEIIGRFVGENHWSHKARTKRGGKMDFSSHTTLKGDKGSNYTVEVG 593
Q P+ + + +G V HW H A +R + + SS +KG S + +
Sbjct: 516 QG-PEGTAQTPHT-DQTMG--VSSPHWQHAADARRISEDEASSDRRIKGAHWSKHAADED 571
Query: 594 HEIGALAKALDTQKQLAER 650
+ A D + +R
Sbjct: 572 AQAIPFQTARDDSQDTTQR 590
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 382 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHA-LRGVG-RWTSRVTP 549
SY Y +YF+ +GFAK F++ SD+ + L+K+ +RG R S VTP
Sbjct: 106 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTP 163
>11_06_0260 - 21761145-21762416
Length = 423
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 463 LSDDSWEKTIGLIKHALRGVGRW 531
L+DDS+E+ IG+ KH LR VG W
Sbjct: 369 LADDSYEE-IGINKHTLREVGIW 390
>11_06_0061 - 19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = -1
Query: 278 RLHPWSTFDSMSLPRPAHPEPDRQR*EHTPSYLMRFI*WRILEKITSAFDVCRKYCLYTH 99
R H WS F+ M + R +P +H P L ++ T A D K C+
Sbjct: 865 RSHVWSLFEEMDVFRKMPQQPHFLPLKHHPLGLREGTALGLMWSYTDAVDNISKLCITDS 924
Query: 98 WR--RRRLPTMTRLDEN 54
+ T+T L+EN
Sbjct: 925 MEIFEDHIKTLTILEEN 941
>01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847
Length = 943
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = -3
Query: 279 PSASLVDVR*HESSSASTPRARQATMRAYTFIFDAIYLVANSRKNNKCV*RMSKVLPLH 103
PS + DV H S P +R TF+ D L +SRKNN C+ M K + L+
Sbjct: 504 PSLRIFDVS-HNLLSGDLPNSRFFDNIPETFLSDNQGL-CSSRKNNSCIAIMPKPIVLN 560
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 141 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 230
CY E + L++ HQI C ++ S V +W C
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,194
Number of Sequences: 37544
Number of extensions: 369922
Number of successful extensions: 1028
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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