Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11028
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               33   0.29 
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                 30   1.5  
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)               30   1.5  
SB_15650| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   8.2  

>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 385 YHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 483
           Y YL  A +F+    N  GF K F+K S + WE
Sbjct: 50  YTYLSMAFHFDRDDINLPGFNKFFKKASKEEWE 82


>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 269

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 187 EGVCSHRCLSGSGCAGRGRLMLSNVDQG---CRRT 282
           +  C HRC+ G  C GR   + S+  +G   C RT
Sbjct: 174 QSCCGHRCVFGKSCYGRSCDLTSDCSEGESCCHRT 208


>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
          Length = 191

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 187 EGVCSHRCLSGSGCAGRGRLMLSNVDQG---CRRT 282
           +  C HRC+ G  C GR   + S+  +G   C RT
Sbjct: 96  QSCCGHRCVFGKSCYGRSCDLTSDCSEGESCCHRT 130


>SB_15650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 533 VHLPTPLSACFMRPMVFSHESSDNFLKSFANP 438
           V LP  +   F+   + S + +DNFL SF+NP
Sbjct: 32  VFLPEDVCEAFISKRLKSGDCTDNFLSSFSNP 63


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 361 ASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDD 474
           +++ L    HYL S + F NYQ   +G   LF++  D+
Sbjct: 326 STILLNAGLHYLESTN-FTNYQRLIDGIVLLFKRAKDE 362


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 184 YEGVCSHRCLSGSGCAGRGRLML 252
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,509,621
Number of Sequences: 59808
Number of extensions: 414158
Number of successful extensions: 1088
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)