Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11028
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17220.1 68418.m02018 glutathione S-transferase, putative           30   1.3  
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr...    29   2.2  
At1g13300.1 68414.m01544 myb family transcription factor contain...    29   2.9  
At5g60270.1 68418.m07554 lectin protein kinase family protein co...    28   5.1  
At2g36370.1 68415.m04463 F-box family protein (FBL11) contains s...    28   6.7  
At1g66020.1 68414.m07493 terpene synthase/cyclase family protein...    28   6.7  
At1g68670.1 68414.m07846 myb family transcription factor contain...    27   8.9  

>At5g17220.1 68418.m02018 glutathione S-transferase, putative
          Length = 214

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 307 YYGQFKDNHVVANELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSD-DSWE 483
           Y  +   N  +A E   +A L    +  YL+S +  N     R  F + + ++SD  SW+
Sbjct: 147 YNNRLSSNRFLAGEEFTMADLTHMPAMGYLMSITDINQMVKARGSFNRWWEEISDRPSWK 206

Query: 484 KTIGLIKH 507
           K + L  H
Sbjct: 207 KLMVLAGH 214


>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF00646: F-box domain, PF01344: Kelch motif
          Length = 372

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 343 NELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKT 489
           NE    AS+ L R  + L S  Y N+Y T R+G  + +  + +D+W KT
Sbjct: 218 NEWFTHASVSLDRKVYALNSREYMNSYDT-RDGSYQRY-TIPEDNWWKT 264


>At1g13300.1 68414.m01544 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 344

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
 Frame = +3

Query: 237 RKTHAIERRPRMQTDFKSAALQRVLRPIQ--------GQPRCSERTEGISLTVFETFLPL 392
           RK H  +R   +  D  + A++   R +         GQP CSE+T G    V E FL +
Sbjct: 29  RKIHVFQRELPLCLDLVTQAIEACKRELPEMTTENMYGQPECSEQTTGECGPVLEQFLTI 88


>At5g60270.1 68418.m07554 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain, and PF00138: Legume
           lectins alpha domain
          Length = 668

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 216 WLWVCWPRKTHAIERRPRMQTDFKSAALQRVLR 314
           W+  CW R +    R PR+ T+F S  +++VL+
Sbjct: 557 WVSECWKRSSLIDARDPRL-TEFSSQEVEKVLK 588


>At2g36370.1 68415.m04463 F-box family protein (FBL11) contains
           similarity to leucine-rich repeats containing F-box
           protein FBL3 GI:5919219 from [Homo sapiens]
          Length = 785

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 193 VCSHRC-LSGSGCAGRGRLMLSNVDQGCRRTLSLPHCSAYYGQFKDNHVVA 342
           VC   C L+  GCA      +++V Q C++  SL  C   Y  F +N ++A
Sbjct: 441 VCESLCYLNIKGCALLSDACIASVIQRCKKLCSLIVC---YTSFSENSILA 488


>At1g66020.1 68414.m07493 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397: Terpene synthase family
          Length = 598

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 421 YQTNREGFAKLFRKLSDDSWEKTIGLIKHALRGVGRWTS 537
           Y+T R+GF K+   + D+    T+ +I  A R  G + S
Sbjct: 131 YETLRDGFGKIEEMMEDEDDLCTVSIIFWAFRRYGHYIS 169


>At1g68670.1 68414.m07846 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 354

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 333 RCSERTEGI-SLTVFETFLPLSPVGLLLQQLPDEQ 434
           +CSE+T  +    VFE F+P+  +  L +++ +E+
Sbjct: 63  QCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEE 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,702
Number of Sequences: 28952
Number of extensions: 293817
Number of successful extensions: 753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)