Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11027
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   0.54 
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    28   1.7  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   3.8  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = -1

Query: 676 ILLHLHVFVKIFNFNSMLFCVLSVVVSYYLIILNLVEQYVL*VD--SIMMFYI 524
           +LL  H++   +  N  ++ VLS++  +  + L++VEQ  L +   S++MF++
Sbjct: 58  VLLFTHIY-DCYKTNESVWNVLSIITYFLALFLHVVEQPTLRIPMASLLMFWL 109


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 676 ILLHLHVFVKIFNFNSMLFCVLSVVVSYYLIILNLVEQYVL*VDSIMM 533
           I L   +FVKI    S  +C+  V VS+Y I   L+  + + +  +++
Sbjct: 152 IQLKKFIFVKILGIVSKTYCLAFVPVSFYQISRGLLLPFTILLSFVLL 199


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 358 LWIKQHIIDHYNIFNFTG 411
           +WIK+  +D Y I NF G
Sbjct: 125 VWIKEMFLDFYGILNFKG 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,891
Number of Sequences: 5004
Number of extensions: 48217
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)