Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11027
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70266-1|CAB61045.1|  364|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF083646-1|AAC32857.1|  364|Caenorhabditis elegans putative pota...    29   2.7  
U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily ass...    28   8.2  
U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily ass...    28   8.2  
AF016447-9|AAG24009.1|  233|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z70266-1|CAB61045.1|  364|Caenorhabditis elegans Hypothetical
           protein C40C9.1 protein.
          Length = 364

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -1

Query: 715 VMFNRYGHTINQFILLHLHVFVKIFNFNSMLFCVLSVVVSYYLIILNLVEQYVL*VDSIM 536
           +MF   G  +N FI   LH F    + +   F  L  V   +L++++L   +++ V    
Sbjct: 126 IMFQSIGERVNTFIAYSLHKFRD--SLHQQGFTCLQEVTPTHLLMVSLTIGFMVIVSGTY 183

Query: 535 MFYIL 521
           MF+ +
Sbjct: 184 MFHTI 188


>AF083646-1|AAC32857.1|  364|Caenorhabditis elegans putative
           potassium channel subunitn2P20 protein.
          Length = 364

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -1

Query: 715 VMFNRYGHTINQFILLHLHVFVKIFNFNSMLFCVLSVVVSYYLIILNLVEQYVL*VDSIM 536
           +MF   G  +N FI   LH F    + +   F  L  V   +L++++L   +++ V    
Sbjct: 126 IMFQSIGERVNTFIAYSLHKFRD--SLHQQGFTCLQEVTPTHLLMVSLTIGFMVIVSGTY 183

Query: 535 MFYIL 521
           MF+ +
Sbjct: 184 MFHTI 188


>U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform a protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = -1

Query: 655 FVKIFNFNSMLFCVLSVVVSYYLIILNLVEQYV----L*VDSIMMFYILNL 515
           F ++     +++C+L  ++++  ++ NL+  Y+    L V SI  ++ILNL
Sbjct: 38  FYELTPVELIIWCMLYAIIAFMAVVGNLLVLYITLFRLRVRSITTYFILNL 88


>U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform b protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = -1

Query: 655 FVKIFNFNSMLFCVLSVVVSYYLIILNLVEQYV----L*VDSIMMFYILNL 515
           F ++     +++C+L  ++++  ++ NL+  Y+    L V SI  ++ILNL
Sbjct: 38  FYELTPVELIIWCMLYAIIAFMAVVGNLLVLYITLFRLRVRSITTYFILNL 88


>AF016447-9|AAG24009.1|  233|Caenorhabditis elegans Hypothetical
           protein C54F6.4 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 703 RYGHTINQFILLHLHVF-VKIFNFNSMLFCVLSVVVSYYLIILNLVEQYVL 554
           RYG   N  +L+ ++   + I  FN+M F   S    YY+  L++V   +L
Sbjct: 47  RYGFLRNDVMLISINCAGIPIAVFNAMFFLYFSKPKKYYMTQLSIVTIIIL 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,058
Number of Sequences: 27780
Number of extensions: 269495
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)