Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11027
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02690.1 68415.m00208 hypothetical protein                          30   1.4  
At4g02600.1 68417.m00354 seven transmembrane MLO family protein ...    29   3.3  

>At2g02690.1 68415.m00208 hypothetical protein
          Length = 623

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 350 HIQTPFY*LN*KRSDQQASCSICNIVSHGFNY 255
           H+  P +  N K +D +  C+IC +   G NY
Sbjct: 121 HVVLPLFWCNNKEADPKMDCNICRVQKAGTNY 152


>At4g02600.1 68417.m00354 seven transmembrane MLO family protein /
           MLO-like protein 1 (MLO1) identical to MLO-like protein
           1 (MLO protein homolog 1) [Arabidopsis thaliana]
           SWISS-PROT:O49621; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 526

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 673 LLHLHVFVKIFNFNSMLFCVLSVV 602
           L HLH+F+ +   + + FCVL+V+
Sbjct: 156 LHHLHIFIFVLAISHVTFCVLTVI 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,047,338
Number of Sequences: 28952
Number of extensions: 227284
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)