Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11024
(815 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5367| Best HMM Match : wnt (HMM E-Value=0) 82 5e-16
SB_25278| Best HMM Match : wnt (HMM E-Value=8.9e-18) 74 2e-13
SB_8923| Best HMM Match : wnt (HMM E-Value=2.5e-22) 70 2e-12
SB_531| Best HMM Match : wnt (HMM E-Value=0) 64 1e-10
SB_40347| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18) 56 3e-08
SB_42523| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_45129| Best HMM Match : wnt (HMM E-Value=8.1e-06) 43 3e-04
SB_38182| Best HMM Match : wnt (HMM E-Value=0) 43 3e-04
SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31) 43 3e-04
SB_15165| Best HMM Match : wnt (HMM E-Value=6e-28) 43 3e-04
SB_22258| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05) 40 0.003
SB_46626| Best HMM Match : wnt (HMM E-Value=0) 30 2.0
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025) 29 3.4
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_4360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
Length = 367
Score = 82.2 bits (194), Expect = 5e-16
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +1
Query: 1 DGCETLCCGRGYSTTRSVEETKCRCQFHWCCNVTCSKCVTTVETHLCN 144
DGC LCC RGY + V+ T+CRC+FHWCC V C C+ V TH+CN
Sbjct: 320 DGCNLLCCSRGYKMKKEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367
>SB_25278| Best HMM Match : wnt (HMM E-Value=8.9e-18)
Length = 167
Score = 73.7 bits (173), Expect = 2e-13
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +1
Query: 7 CETLCCGRGYSTTRSVEETKCRCQFHWCCNVTCSKCVTTVETHLC 141
CE +CCGRGYS ++E KC C+FHWCC V C+KC + H C
Sbjct: 122 CEVMCCGRGYSVREQIKEWKCHCKFHWCCRVECAKCSKKLMVHTC 166
>SB_8923| Best HMM Match : wnt (HMM E-Value=2.5e-22)
Length = 153
Score = 70.1 bits (164), Expect = 2e-12
Identities = 25/37 (67%), Positives = 26/37 (70%)
Frame = +1
Query: 4 GCETLCCGRGYSTTRSVEETKCRCQFHWCCNVTCSKC 114
GCE LCCGRGY T EE CRC+FHWCC V C KC
Sbjct: 107 GCELLCCGRGYERTVINEEVNCRCRFHWCCEVRCKKC 143
>SB_531| Best HMM Match : wnt (HMM E-Value=0)
Length = 646
Score = 64.5 bits (150), Expect = 1e-10
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +1
Query: 1 DGCETLCCGRGYSTTRSVEETKCRCQFHWCCNVTCSKCVTTVE 129
DGC+ +CCGRGY + V + +C C+F WCC+V C C+ VE
Sbjct: 604 DGCDLMCCGRGYVSRTEVRQEQCACKFFWCCHVRCQTCMRRVE 646
>SB_40347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 63.3 bits (147), Expect = 2e-10
Identities = 22/47 (46%), Positives = 27/47 (57%)
Frame = +1
Query: 1 DGCETLCCGRGYSTTRSVEETKCRCQFHWCCNVTCSKCVTTVETHLC 141
DGC+ LCCG GY+T C C+F WCCNV C KC + + C
Sbjct: 351 DGCDLLCCGSGYNTQTVRSVHSCHCRFIWCCNVVCKKCEKIFDRYTC 397
>SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18)
Length = 354
Score = 56.0 bits (129), Expect = 3e-08
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +1
Query: 7 CETLCCGRGYSTTRSVEETKCRCQFHWCCNVTC 105
CE +CCGRGY T +C C+F WCC VTC
Sbjct: 247 CEEMCCGRGYDTHEYTRRWRCNCRFKWCCEVTC 279
Score = 32.3 bits (70), Expect = 0.48
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 1 DGCETLCCGRGYSTTRSVEETKCR 72
+ C+ +CCGRGY T + +CR
Sbjct: 72 ENCDVMCCGRGYDTHLITKRWQCR 95
>SB_42523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 7 CETLCCGRGYSTTR--SVEETKCRCQFHWCCNVTCSKCVTTVETHLC 141
C LC + T ++ T C C+FHWCC V C C T C
Sbjct: 206 CRQLCDSCRFDTQEFTEIKNTFCNCKFHWCCKVKCMTCKETTRKTRC 252
>SB_45129| Best HMM Match : wnt (HMM E-Value=8.1e-06)
Length = 125
Score = 43.2 bits (97), Expect = 3e-04
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 7 CETLCCGRGYSTTR--SVEETKCRCQFHWCCNVTCSKCVTTVETHLC 141
C +C Y + +V +KC C+F WCC++ CS+C V C
Sbjct: 77 CIQMCTSCDYRVEKKLAVRSSKCNCKFVWCCDIKCSECKKLVAVTKC 123
>SB_38182| Best HMM Match : wnt (HMM E-Value=0)
Length = 289
Score = 43.2 bits (97), Expect = 3e-04
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 7 CETLCCGRGYSTTR--SVEETKCRCQFHWCCNVTCSKCVTTVETHLC 141
C +C Y + +V +KC C+F WCC++ CS+C V C
Sbjct: 241 CIQMCTSCDYRVEKKLAVRSSKCNCKFVWCCDIKCSECKKLVAVTKC 287
>SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)
Length = 731
Score = 43.2 bits (97), Expect = 3e-04
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 7 CETLCCGRGYSTTR--SVEETKCRCQFHWCCNVTCSKCVTTVETHLC 141
C +C Y + +V +KC C+F WCC++ CS+C V C
Sbjct: 683 CIQMCTSCDYRVEKKLAVRSSKCNCKFVWCCDIKCSECKKLVAVTKC 729
>SB_15165| Best HMM Match : wnt (HMM E-Value=6e-28)
Length = 224
Score = 43.2 bits (97), Expect = 3e-04
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 7 CETLCCGRGYSTTR--SVEETKCRCQFHWCCNVTCSKCVTTVETHLC 141
C +C Y + +V +KC C+F WCC++ CS+C V C
Sbjct: 176 CIRMCTSCDYRVEKKLAVRSSKCNCKFVWCCDIKCSECKKLVAVTKC 222
>SB_22258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 7 CETLCCGRGYSTTR--SVEETKCRCQFHWCCNVTCSKCVTTVETHLC 141
C +C + + +V +KC C+F WCC++ CS+C V C
Sbjct: 197 CIQMCTSCDFRVEKKLAVRSSKCNCKFVWCCDIKCSECKKLVAVANC 243
>SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)
Length = 155
Score = 39.5 bits (88), Expect = 0.003
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 52 VEETKCRCQFHWCCNVTCSKCVTTVETHLC 141
V++ +CRC+F WCC+V C C V C
Sbjct: 124 VQQYRCRCKFVWCCDVKCDMCKRLVVMGTC 153
>SB_46626| Best HMM Match : wnt (HMM E-Value=0)
Length = 359
Score = 30.3 bits (65), Expect = 2.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 1 DGCETLCCGRGYSTTRSVEETKC 69
+ C+ +CCGRGY T + +C
Sbjct: 336 ENCDVMCCGRGYDTHLITKRWQC 358
>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
Length = 1480
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RFEPRELTYTR*GEAEIASQDYQH 337
+F P+E Y+R + +I+ +DYQH
Sbjct: 659 QFPPKEAFYSRLNDTDISEEDYQH 682
>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 260 TLRFEPRELTYTR*GEAEIASQDYQH 337
T++ P+E Y+R + +I+ +DYQH
Sbjct: 616 TVQLPPKEAFYSRLNDTDISEEDYQH 641
>SB_4360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 1 DGCETLCCGRGYSTTR 48
D C+ LCC RGY+T +
Sbjct: 118 DNCQNLCCERGYTTKK 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,718,923
Number of Sequences: 59808
Number of extensions: 411012
Number of successful extensions: 1075
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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