Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11023
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   4.0  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   9.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.3  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 378 LKYIDNYQTNTVNQSYILFKNNHHLFVVW 292
           LK +      T  QSY+ FKN+  +++ W
Sbjct: 226 LKEVQEVYPATGGQSYLSFKNSEMMYLTW 254


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -1

Query: 581 EHYVRWSNLKPHILTTYIRAHK**ITK*SERKALILFTTQISNRRARAILGQSKL 417
           + +++WSN+KP  +  +   HK      SE   ++   + ++N R R+   Q  +
Sbjct: 384 QQFLQWSNIKPDHIAVFTADHKERFH--SEAGVVVSTYSMVANTRNRSYDSQKMM 436


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 625 ICIESCKMIKSYFE*SIMLGGPT*SLTFLQPTL 527
           +C+ +CK  +SYF  ++ +  P   L+ ++P L
Sbjct: 691 VCVFTCKFAESYFFLTLSIRDPIIVLSTMRPYL 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,816
Number of Sequences: 5004
Number of extensions: 49618
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)