Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11023
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709...    28   9.6  
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109...    28   9.6  
04_03_0784 - 19610370-19611548,19611830-19611919,19612001-196120...    28   9.6  

>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
            7097150-7097367,7097502-7097717,7097922-7098107,
            7098181-7098303,7098399-7098514,7099254-7099832,
            7101485-7101517,7102485-7103679,7103732-7103797,
            7104843-7104905,7105328-7105411
          Length = 1407

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 429  TIQVGRGIKYKWR*SHKLKYIDNYQTNTVNQSY 331
            TI++ RG++ ++   HKL+Y D+   +    SY
Sbjct: 924  TIEILRGLRERYEIHHKLRYTDDALISAAKLSY 956


>06_03_1297 +
           29110432-29110542,29110613-29110804,29110893-29110976,
           29111115-29111191,29111410-29111476,29111640-29111697,
           29111823-29111890,29111981-29112043,29112549-29112651,
           29112685-29112845,29112934-29113053,29113300-29113356,
           29113646-29113809,29113896-29114055,29114720-29114803,
           29115074-29115196,29115368-29115498,29115577-29115658,
           29115876-29115963,29116143-29116186,29116264-29116387,
           29116450-29116537,29116649-29116849,29116894-29117104,
           29117383-29117454,29117587-29117790,29117959-29118087
          Length = 1021

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 369 IDNYQTNTVNQSYILFKNNHHLFVVWMTASD 277
           I N+  + +   YI+   +HH  +VW  A D
Sbjct: 151 IGNFSWDYIYAEYIVASGDHHRSIVWQIAED 181


>04_03_0784 -
           19610370-19611548,19611830-19611919,19612001-19612076,
           19612917-19613134,19613333-19613548,19613974-19614159,
           19614242-19614364,19614456-19614571,19615126-19615588
          Length = 888

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 429 TIQVGRGIKYKWR*SHKLKYIDNYQTNTVNQSY 331
           TIQ+ RG++ ++   HKL+Y D+        SY
Sbjct: 405 TIQILRGLRERYELHHKLRYTDDSLIAAAQLSY 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,791,933
Number of Sequences: 37544
Number of extensions: 264132
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)