Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11023
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_836| Best HMM Match : DUF82 (HMM E-Value=5.3)                       29   5.6  

>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 161  KQFLNGHSHLSVSNRPSHHIATFLKRGIIITV 66
            K FL   +  SV NR  H+I   L+RGI ++V
Sbjct: 2678 KVFLKTEASFSVMNRTRHNILNMLRRGINVSV 2709


>SB_836| Best HMM Match : DUF82 (HMM E-Value=5.3)
          Length = 168

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 334 RLVYSIRLIIINILKFMTLPPFVFNTSANLDCPKIALARLLLIWVVNKIS 483
           +L Y  RLI  ++   +  P  V  T A++D P I L ++    V+N+++
Sbjct: 57  KLGYHHRLIPKSLASSLPKPILVRRTPASMDVPSIVLLQMCQTLVINELT 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,924,063
Number of Sequences: 59808
Number of extensions: 331053
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)