Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11023
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18680.2 68416.m02373 aspartate/glutamate/uridylate kinase fa...    28   6.1  
At3g18680.1 68416.m02372 aspartate/glutamate/uridylate kinase fa...    28   6.1  

>At3g18680.2 68416.m02373 aspartate/glutamate/uridylate kinase
           family protein similar to UMP-kinase GB:CAB38122
           gi:4468612 from [Lactococcus lactis] ; contains Pfam
           profile PF00696: Amino acid kinase family
          Length = 366

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 749 SPLSQMSVLYKVSFVSVTLSNTIFAKLQDYCK 654
           SP+S  S + + SFV +TL N  F   Q+Y +
Sbjct: 11  SPISTSSSISRTSFVPLTLRNRTFFSNQNYSR 42


>At3g18680.1 68416.m02372 aspartate/glutamate/uridylate kinase
           family protein similar to UMP-kinase GB:CAB38122
           gi:4468612 from [Lactococcus lactis] ; contains Pfam
           profile PF00696: Amino acid kinase family
          Length = 339

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 749 SPLSQMSVLYKVSFVSVTLSNTIFAKLQDYCK 654
           SP+S  S + + SFV +TL N  F   Q+Y +
Sbjct: 11  SPISTSSSISRTSFVPLTLRNRTFFSNQNYSR 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,456,109
Number of Sequences: 28952
Number of extensions: 238956
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)