Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11022
         (374 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   3.1  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    20   7.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 132 TGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGN 254
           TG     +DI KD+  + N D+ +++          G VGN
Sbjct: 466 TGVAARGLDI-KDVQHVINYDLPKSIDEYVHRIGRTGRVGN 505


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 299  FNTEFTIHLYREQ 261
            FNT FTIH + E+
Sbjct: 2042 FNTNFTIHYWIEK 2054


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 227 VLCRI*DSLRDVIIGYLVDILGDVNSRANRAGV 129
           VL R+   LR++I+G L+ +LG    R    GV
Sbjct: 731 VLLRV-SILRNIIVGTLMMVLGTGCVRIKITGV 762


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 174 RYPWRCQQQ 148
           RY W+C+ Q
Sbjct: 43  RYTWKCENQ 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,105
Number of Sequences: 336
Number of extensions: 1262
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7828090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)