Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11022
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   0.96 
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    26   2.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   5.1  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    25   5.1  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   5.1  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    24   6.8  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    24   9.0  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    24   9.0  

>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 76  MKPIQDRRLPNH*QRKAYTPALFALLLTSPRIST-RYPI 189
           ++PIQ  R+ +    KA+   L++LLL  P  +T RYP+
Sbjct: 111 IQPIQRGRVVDWEALKAFWKHLYSLLLKDPNDTTFRYPV 149


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 344 C*FIKVGNRLRNKLRF 297
           C  IK+GN LRNK RF
Sbjct: 136 CDIIKIGNILRNKERF 151


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 21/74 (28%), Positives = 27/74 (36%)
 Frame = +3

Query: 9    LKTSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISN 188
            LK  LS    +     L     +   T  SLA S+  +GL T S     D +        
Sbjct: 799  LKQQLSEFNDEKDTQPLPEHTTSYPSTQISLAPSIHVEGLETYSSSERKDSSNKYKSRKR 858

Query: 189  NDISQAVSNAAKNK 230
            N I Q V+   K K
Sbjct: 859  NPIRQKVTEDDKGK 872


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 220 AAFETACEMSLLDIWSISLAMSTAERTEP 134
           AA +  CE+S L    ISL   TA+ T P
Sbjct: 308 AAEKAKCELSSLSKTDISLPFITADATGP 336


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 6   VLKTSLSADAIKAGKNQLKTQVLNEADTGSSL 101
           +L  SLS+DAI     ++K+ +L  +D+ +S+
Sbjct: 203 LLSKSLSSDAIPLKNGEIKSTMLMPSDSDNSV 234


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 142 FALLLTSPRISTRYPIMTSRRLSQMRQRTRFQLALL 249
           FA  LTS + S    ++ S+RLSQ+     FQL+ L
Sbjct: 810 FASQLTSLQKSI---VVLSKRLSQLSSNNEFQLSFL 842


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 76  MKPIQDRRLPNH*QRKAYTPALFALLLTSPRISTRYPIMTSRRLSQMRQRTR 231
           + PI D       QRK    ++ +L  +S    TR P +TSR ++ + +R++
Sbjct: 191 LSPITDMPHLAPLQRKNSNASIHSLGSSSRPTLTRTPSITSRSVNSVTERSK 242


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +3

Query: 54  QLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKI 233
           +LK   + +  TGS    S     L       AVD++K   +++  +  +A+++    KI
Sbjct: 114 RLKPLKILDLCTGSGCISSFVLANLRVPHTIEAVDVSKKALKLAVKNCDRAIAHGTVGKI 173

Query: 234 S 236
           +
Sbjct: 174 N 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,022
Number of Sequences: 5004
Number of extensions: 21693
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)