Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11022
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 32 0.13
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 29 1.2
01_06_1410 + 37116414-37116695,37116796-37116902,37117148-371176... 28 2.7
12_01_0605 - 4983235-4983849,4985658-4986578 27 4.8
04_04_1036 + 30305548-30305588,30305710-30305761,30306408-303064... 27 4.8
01_01_1237 - 10047417-10047934,10048899-10049136 27 4.8
09_04_0392 + 17251536-17252336 27 6.3
03_05_0111 - 20919291-20919439,20920128-20920237,20920341-209204... 27 6.3
01_06_1768 + 39771025-39771241,39771284-39771513,39772165-397722... 26 8.4
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 32.3 bits (70), Expect = 0.13
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +3
Query: 18 SLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDI 197
++ D +K+ KN+ K + + D GSSL L + TGSV V A +SN +
Sbjct: 423 TVGEDGLKSSKNKTKRKYSDVVDDGSSLMNWLNGKKKRTGSVHHTV--AHPAGNLSNKKV 480
Query: 198 SQAVS 212
+ S
Sbjct: 481 TPTAS 485
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/78 (20%), Positives = 35/78 (44%)
Frame = +3
Query: 21 LSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDIS 200
++ + + K K+ VL ++ +E + Q L G + KD++ I+ NDIS
Sbjct: 405 VTQEQLDRAKQATKSAVLMNLESRVVASEDIGRQILTYGERKPIEHFLKDLEAITLNDIS 464
Query: 201 QAVSNAAKNKISIGAVGN 254
+ +++ + G+
Sbjct: 465 STAKKIISSPLTLASWGD 482
>01_06_1410 +
37116414-37116695,37116796-37116902,37117148-37117649,
37118211-37118326,37119007-37119211
Length = 403
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 169 SLAMSTAERTEPVYKPCAANDSASDDPVSASFNTCVFN 56
SLA + ++ +P C+AN + SD + A C FN
Sbjct: 206 SLASNICDQLDPASPKCSANSTMSDLVLPARDIICAFN 243
>12_01_0605 - 4983235-4983849,4985658-4986578
Length = 511
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 142 FALLLTSPRISTRYPIMTSRRLSQMRQRT 228
FALL +P +S +P++ L +R+RT
Sbjct: 214 FALLTLTPNVSEFFPVVAMADLQGLRRRT 242
>04_04_1036 +
30305548-30305588,30305710-30305761,30306408-30306487,
30307035-30307110,30307169-30307252,30307356-30307501,
30307608-30307826,30308180-30308271,30308677-30308867,
30309100-30309706,30309811-30310004
Length = 593
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 105 ESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNK 230
E + + YTGS +S I KD+++ + + S SNA N+
Sbjct: 208 EPVKSSPSYTGSQKSGSRIKKDVNRRNEDSPSSLKSNAKGNE 249
>01_01_1237 - 10047417-10047934,10048899-10049136
Length = 251
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 145 RTEPVYKPCAANDSASDDPVSAS 77
R E +YK C NDS DD V S
Sbjct: 93 RNETLYKSCDYNDSGPDDTVEWS 115
>09_04_0392 + 17251536-17252336
Length = 266
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 175 SISLAMSTAERTEPVYKPCAANDSASDDPV 86
+++ A +TAE+ P PC+A+ + PV
Sbjct: 196 AVTAATTTAEQMTPTLSPCSADAEETTTPV 225
>03_05_0111 -
20919291-20919439,20920128-20920237,20920341-20920466,
20920545-20920632,20920933-20921053,20921159-20921231,
20921399-20921462,20921543-20921739,20921844-20921899,
20922050-20922146,20923731-20923870
Length = 406
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 178 WSISLAMSTAERTEPVYKPCAANDSA 101
WS S +A+R + V++ C NDSA
Sbjct: 375 WSCSGICKSADRMKEVHQRCGENDSA 400
>01_06_1768 +
39771025-39771241,39771284-39771513,39772165-39772245,
39772468-39772824,39772942-39773046
Length = 329
Score = 26.2 bits (55), Expect = 8.4
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 51 NQLKTQVLNEADTGSSLAESLAAQGLYTGSVR--SAVDIAKDIDQISNNDISQAVSNAAK 224
NQ+ QVL + D+ A S AQ + S R S V+ KD + + S+ S +
Sbjct: 222 NQISGQVLEQVDSWDLSASSPPAQAYFWLSRRAFSTVEAGKDTIEAAKGTASRLSSKKDE 281
Query: 225 N 227
N
Sbjct: 282 N 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,629,071
Number of Sequences: 37544
Number of extensions: 137764
Number of successful extensions: 382
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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