Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11022
         (374 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         33   0.100
SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)                       29   1.2  
SB_26680| Best HMM Match : GATA (HMM E-Value=2.3)                      28   2.1  
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_40056| Best HMM Match : QPP (HMM E-Value=0.57)                      27   5.0  
SB_36376| Best HMM Match : DUF360 (HMM E-Value=0.53)                   27   6.5  
SB_13357| Best HMM Match : 7tm_1 (HMM E-Value=0.0011)                  27   6.5  
SB_42155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052)             26   8.7  

>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 32.7 bits (71), Expect = 0.100
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   KVLKTSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQG 125
           KV K  +S D +   KNQLK  +L   ++G +  E + AQG
Sbjct: 328 KVAKGEVSDDELLRAKNQLKASLLMNNESGQTNFEDIGAQG 368


>SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)
          Length = 208

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 159 IAKDIDQISNNDISQAVSNAAKNKISIGAVGN 254
           +A D+  ++  DISQ  +N A N++ I  VGN
Sbjct: 12  VANDL-AVNRPDISQVANNLADNRLDISQVGN 42


>SB_26680| Best HMM Match : GATA (HMM E-Value=2.3)
          Length = 193

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 243 RQLKSCSLPHLRQPARCH 190
           RQ+K   LPH RQPA  H
Sbjct: 118 RQVKESPLPHRRQPAHAH 135


>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 267 GTNASFQQRQLKSCSLPHLRQPARCHYWISGRYPW 163
           G+++ +  R+   C LP+   P     W + R PW
Sbjct: 360 GSSSPYWSREGSVCHLPYTAPPPTWSSWTNTRAPW 394


>SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 195 CHYWISGRYPWRCQQQSEQSRCI 127
           CH WI G +P R  +  E   C+
Sbjct: 272 CHVWIRGSHPARALESVEHELCL 294


>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1661

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 233 NLVLCRI*DSLRDVIIGYLVDILGDVN 153
           N+++  + D + DVI+G ++D++ DVN
Sbjct: 79  NVIVGLVIDVVDDVIVGLMLDVVDDVN 105


>SB_40056| Best HMM Match : QPP (HMM E-Value=0.57)
          Length = 291

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 282 NSSI*GTNASFQQRQLKSCSLPHLRQPARCH 190
           NSS+ GT+ + ++ +L       +RQP RCH
Sbjct: 158 NSSVNGTSVNLRRTRLGPNLTSIVRQPNRCH 188


>SB_36376| Best HMM Match : DUF360 (HMM E-Value=0.53)
          Length = 259

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 233 NLVLCRI*DSLRDVIIGYLVDILGDVN 153
           N+++  + D + DVI+G ++D++ DVN
Sbjct: 43  NVIVGLVLDVVDDVIVGLVLDLVDDVN 69


>SB_13357| Best HMM Match : 7tm_1 (HMM E-Value=0.0011)
          Length = 358

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 12  KTSLSADAIKAGKNQLKTQVLNEA-DTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISN 188
           + S     I     Q  T    EA D  +SL ++   Q + TG+   A+D+ K++D I+ 
Sbjct: 272 RESTQQSNISTSTRQTVTASSQEAIDRENSLGDNNTRQNI-TGNSNKAIDLGKNLDSITM 330

Query: 189 NDISQAVSN 215
               +   N
Sbjct: 331 RGEEEITGN 339


>SB_42155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 233 NLVLCRI*DSLRDVIIGYLVDILGDVN 153
           N+++  + D + DVI+G ++D++ DVN
Sbjct: 43  NVIVGLVLDVVDDVIVGLVLDLVDDVN 69


>SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052)
          Length = 126

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 15  TSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAA 119
           T +S D IKAGKN    +++  A TG    +++AA
Sbjct: 86  TKVSEDVIKAGKN---LKIIGRAGTGVDNIDTVAA 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,102,521
Number of Sequences: 59808
Number of extensions: 165334
Number of successful extensions: 539
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)