Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11022
         (374 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M91556-1|AAA59899.1| 1682|Homo sapiens Na+ channel protein.            29   3.7  
BC026156-1|AAH26156.2|  754|Homo sapiens leucine rich repeat con...    29   4.9  
AY963267-1|AAY46032.1|  754|Homo sapiens ROR gamma binding prote...    29   4.9  
Z74477-2|CAI41996.1|  352|Homo sapiens testis expressed 13A prot...    29   6.5  

>M91556-1|AAA59899.1| 1682|Homo sapiens Na+ channel protein.
          Length = 1682

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 195 CHYWISGRYPWRCQQQSEQSRCIS--LALLMIRQATILYRLHLTLVSSTDFC 46
           C  W+     W C + + QS CI   L +++I    +LY L L LVSS   C
Sbjct: 686 CGEWVETL--WDCMEVAGQSWCIPFYLMVILIGNLLVLY-LFLALVSSFSSC 734


>BC026156-1|AAH26156.2|  754|Homo sapiens leucine rich repeat
           containing 36 protein.
          Length = 754

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 99  LAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAK 224
           L ESL+ QG Y G + S  D  ++   + + D+S+ +  + K
Sbjct: 25  LVESLSLQGSYAGKIHSISDAFRNFKNLRSLDLSRNLITSLK 66


>AY963267-1|AAY46032.1|  754|Homo sapiens ROR gamma binding protein
           70 protein.
          Length = 754

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 99  LAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAK 224
           L ESL+ QG Y G + S  D  ++   + + D+S+ +  + K
Sbjct: 25  LVESLSLQGSYAGKIHSISDAFRNFKNLRSLDLSRNLITSLK 66


>Z74477-2|CAI41996.1|  352|Homo sapiens testis expressed 13A
           protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 186 WISGRYPWRCQQQSEQSRCISLALLMIRQAT 94
           W  G  PWR Q+   +S C SL +L IR++T
Sbjct: 229 WRPGLPPWRPQRSWRESSCSSLEML-IRKST 258


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,945,725
Number of Sequences: 237096
Number of extensions: 692297
Number of successful extensions: 2002
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2002
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)