Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11022
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13644-8|AAB52679.1|  471|Caenorhabditis elegans Hypothetical pr...    39   0.001
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    29   0.82 

>U13644-8|AAB52679.1|  471|Caenorhabditis elegans Hypothetical
           protein F56D2.1 protein.
          Length = 471

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +3

Query: 3   KVLKTSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQI 182
           K L ++ + + +   KNQ +T +    +T +  A   A + LYTG++R   ++   I ++
Sbjct: 368 KHLASAATEEEVAMAKNQFRTNLYQNLETNTQKAGFNAKELLYTGNLRQLSELEAQIQKV 427

Query: 183 SNNDISQAVSNAAKNK-ISIGAVGN*HLFP 269
               + +A+S    ++ ++   VG    FP
Sbjct: 428 DAGAVREAISRHVYDRDLAAVGVGRTEAFP 457


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 123 GLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKI 233
           GLYT    + VD+ K+I ++ +  +   +    KNK+
Sbjct: 238 GLYTSKSENGVDVGKEIQKLRSGPLVSEIFERMKNKL 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,688,109
Number of Sequences: 27780
Number of extensions: 121636
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)