Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11022
         (374 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34780.1 68415.m04270 expressed protein                             29   1.0  
At3g51870.1 68416.m05688 mitochondrial substrate carrier family ...    28   1.8  
At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1)...    28   2.3  
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co...    27   3.1  
At3g28770.1 68416.m03591 expressed protein                             27   5.4  
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa...    27   5.4  
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa...    27   5.4  
At5g61430.1 68418.m07708 no apical meristem (NAM) family protein...    26   7.1  
At2g18420.1 68415.m02145 gibberellin-responsive protein, putativ...    26   7.1  

>At2g34780.1 68415.m04270 expressed protein
          Length = 1297

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 45  GKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQI--SNNDISQAVSNA 218
           G  +L +  +  + T  S  + LA+QG    SV ++ +IAKD   I  + + + Q +S+ 
Sbjct: 512 GSRKLPSSGVISSATSFSDGQLLASQGREQFSVTTSAEIAKDKPNIQPTKSSMLQKISDT 571

Query: 219 AKN 227
           +KN
Sbjct: 572 SKN 574


>At3g51870.1 68416.m05688 mitochondrial substrate carrier family
           protein peroxisomal Ca-dependent solute carrier -
           Oryctolagus cuniculus, EMBL:AF004161
          Length = 381

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 94  RRLPNH*QRKAYTPALFALLLTSPRISTRYPIMTSRRLSQMR 219
           + LP   ++KA +  L A+L       T YP+ T RR  QMR
Sbjct: 267 KSLPEEYRKKAQSSLLTAVLSAGIATLTCYPLDTVRRQMQMR 308


>At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1) /
           gibberellin-responsive protein 1 identical to SP|P46689
           Gibberellin-regulated protein 1 precursor {Arabidopsis
           thaliana}; supporting cDNA
           gi|887938|gb|U11766.1|ATU11766
          Length = 98

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 92  IVACRIISSARLIHRLCSLCC 154
           +  CR+    RL HR C  CC
Sbjct: 45  VARCRLSRRPRLCHRACGTCC 65


>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
            domain-containing protein contains Pfam profile PF01426:
            BAH domain
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 3    KVLKTSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQI 182
            KV+K ++  D+       +KT V +EAD  S L + +A+  L         D++K +D +
Sbjct: 900  KVIKENILDDSDSGEVKDIKTDVKSEADCTSDLTKRVASSML-----TECRDVSKMVDSV 954

Query: 183  S 185
            +
Sbjct: 955  A 955


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +3

Query: 12   KTSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNN 191
            K S+ +++ K  +NQ K+Q   +AD+  S  E L           S  D   D D+  N 
Sbjct: 1249 KESMESES-KEAENQQKSQATTQADSDESKNEILMQA---DSQADSHSDSQADSDESKNE 1304

Query: 192  DISQAVSNAAKNK 230
             + QA S A   +
Sbjct: 1305 ILMQADSQATTQR 1317



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +3

Query: 12   KTSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNN 191
            K S+ +++ K  +NQ K+Q   +AD+  S  E L           S  D   D D+  N 
Sbjct: 1360 KESMESES-KEAENQQKSQATTQADSDESKNEILMQA---DSQADSHSDSQADSDESKNE 1415

Query: 192  DISQAVSNAAKNK 230
             + QA S A   +
Sbjct: 1416 ILMQADSQATTQR 1428


>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 438

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +2

Query: 194 HLAGCLKCGKE-QDFNWRC 247
           H+AGC+ C KE +  NW C
Sbjct: 404 HVAGCMSCLKEIKSKNWGC 422


>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 462

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +2

Query: 194 HLAGCLKCGKE-QDFNWRC 247
           H+AGC+ C KE +  NW C
Sbjct: 428 HVAGCMSCLKEIKSKNWGC 446


>At5g61430.1 68418.m07708 no apical meristem (NAM) family protein
           PF02365 : No apical meristem (NAM) protein; similar to
           cup-shaped cotyledon CUC2 (GI:1944132) [Arabidopsis
           thaliana]
          Length = 336

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 193 SLLDIWSISLAMSTAERTEPVYKPCAANDSASDDPVSAS-FNTCVFN 56
           SLL   + S   +   +TEPVY PC +N +  +   + + F++ V N
Sbjct: 191 SLLPSLTDSSPYNDKTKTEPVYVPCFSNQTDQNQGTTLNCFSSPVLN 237


>At2g18420.1 68415.m02145 gibberellin-responsive protein, putative
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 88

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 92  IVACRIISSARLIHRLCSLCC 154
           +V C + S   L HR C  CC
Sbjct: 25  MVRCSLSSRPNLCHRACGTCC 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,267,914
Number of Sequences: 28952
Number of extensions: 111082
Number of successful extensions: 354
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)