Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11021
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    30   0.28 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.5  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   4.6  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   8.0  

>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 314 IPVSKSNLYETNILWTLFNGEAFDYIGSQRVAYDIKRGVWP----PNAPLAPTDV 466
           I V   + Y  N+++T F+G   D I     AYD ++ V P    P  PL P DV
Sbjct: 335 INVHPRHPYAGNLVFTAFSGSHQDAISKGLKAYDERKAVDPVWKVPYLPLDPHDV 389


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 586  NDIQIFLKQLSNAYNMTIPGIFNGSLPTSSIH 681
            N IQ+F+   +N Y +TI   F G+L T  I+
Sbjct: 1798 NQIQLFVDD-TNVYRVTIHKTFEGNLTTKPIN 1828


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 502 LINYVNENTWPLNAFVPTLAPSTINDGDNDIQIFLKQLSNAYNMTIPGIFNGSLPT 669
           LI Y N++ +  NAF      S ++  ++ +  F+       +  + G+  GSLPT
Sbjct: 97  LIPY-NDSNYYHNAFTTPYETSVLHPENSYLTQFIADAPTTTSQRLKGLTTGSLPT 151


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 56  NKYRSLHEKVSYLNDSN 106
           N+Y+ L EK  Y NDSN
Sbjct: 246 NRYKELEEKRRYENDSN 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,960
Number of Sequences: 5004
Number of extensions: 61036
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)