Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11021
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0671 - 30769631-30769803,30770535-30770873,30770952-307710...    35   0.073
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94...    30   1.6  
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89...    30   2.1  
08_02_0997 + 23409932-23410894                                         28   8.4  
05_01_0357 - 2802437-2802511,2802594-2802692,2803215-2803280,280...    28   8.4  
01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794           28   8.4  

>02_05_0671 -
           30769631-30769803,30770535-30770873,30770952-30771036,
           30771229-30771369,30771802-30771873,30772183-30772302,
           30772606-30772677,30772758-30772895,30773249-30773320,
           30773609-30773685,30773761-30773837,30773960-30774077,
           30774852-30774930
          Length = 520

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 18/60 (30%), Positives = 37/60 (61%)
 Frame = +2

Query: 329 SNLYETNILWTLFNGEAFDYIGSQRVAYDIKRGVWPPNAPLAPTDVKLHVEIGQIGGSLS 508
           SNL +  +++ +FNGEA+ Y+GS++   ++ +G    N  ++   +   +EIG +G ++S
Sbjct: 206 SNL-KKQLVFAVFNGEAWGYLGSRKFLQELDQGADSVNG-ISSLLIDQVLEIGSVGKAIS 263


>12_01_0125 -
           946480-947242,947283-947374,947462-947680,948059-949156
          Length = 723

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/62 (24%), Positives = 36/62 (58%)
 Frame = +3

Query: 60  NTEVCMRRSATSTIVTTTKVCDPLGDQNVYYSLFPRTKESKKQSITLVTARIDSASLFDG 239
           NT++ +  S  S + + +K  +PL   +++ +++  T + KK + ++ T R ++AS  + 
Sbjct: 477 NTQLAIVHSKFSELTSASKTSNPLPTVDIFLAVYEDTLKWKKIAESISTNRTETASWENS 536

Query: 240 VS 245
           V+
Sbjct: 537 VT 538


>11_01_0115 -
           889159-889921,889962-890053,890141-890359,890738-891835
          Length = 723

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/56 (25%), Positives = 33/56 (58%)
 Frame = +3

Query: 60  NTEVCMRRSATSTIVTTTKVCDPLGDQNVYYSLFPRTKESKKQSITLVTARIDSAS 227
           NT++ +  S  S + + +K  +PL   +++ +++  T + KK + ++ T R ++AS
Sbjct: 477 NTQLAIVHSKFSELTSASKTSNPLPTVDIFLAVYEDTLKWKKIAESISTNRTETAS 532


>08_02_0997 + 23409932-23410894
          Length = 320

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 524 FSFT*LIRIHRSGRFQRVVLHRSVPAVHSAAT 429
           F F  LIR +RSGR  R++    VP    AAT
Sbjct: 10  FEFLPLIRCYRSGRVDRLLPDTRVPPSVDAAT 41


>05_01_0357 -
           2802437-2802511,2802594-2802692,2803215-2803280,
           2803619-2803665,2804067-2804133,2805062-2805283
          Length = 191

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 689 LNECIDDVGREPLKIPGIVMLYAFDNCFRKICISL 585
           L+  + D+GR+PLK    V++ A  NC +++C  L
Sbjct: 117 LDRVVADLGRKPLK----VLVQALANCRKEVCKEL 147


>01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794
          Length = 473

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 565 STINDGDNDIQIFLKQLSNAYNMTIPGIFNGSLPTSSIHSFR 690
           S + DG + + + L   S+ ++    G F  S PTSS  SFR
Sbjct: 98  SAVYDGASMVDVLLMASSSPHHHAGAGSFQYSSPTSSSASFR 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,160
Number of Sequences: 37544
Number of extensions: 390932
Number of successful extensions: 861
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)