Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11021
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical p...    42   3e-04
Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical p...    42   3e-04
AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine r...    29   2.5  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   9.9  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   9.9  

>Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical
           protein ZC434.6b protein.
          Length = 723

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +2

Query: 329 SNLYETNILWTLFNGEAFDYIGSQRVAYDIKRGVWPPNA--------PLAPTDVKLHVEI 484
           SN    N+ +  FNGE+ DYIGS   AY ++ G +P           P+ P ++   +E+
Sbjct: 327 SNTSNRNVFFAFFNGESLDYIGSGAAAYQMENGKFPQMIRSDRTHIHPIRPNELDYILEV 386

Query: 485 GQIG 496
            QIG
Sbjct: 387 QQIG 390


>Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical
           protein ZC434.6a protein.
          Length = 721

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +2

Query: 329 SNLYETNILWTLFNGEAFDYIGSQRVAYDIKRGVWPPNA--------PLAPTDVKLHVEI 484
           SN    N+ +  FNGE+ DYIGS   AY ++ G +P           P+ P ++   +E+
Sbjct: 327 SNTSNRNVFFAFFNGESLDYIGSGAAAYQMENGKFPQMIRSDRTHIHPIRPNELDYILEV 386

Query: 485 GQIG 496
            QIG
Sbjct: 387 QQIG 390


>AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein190 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 645 SGYCHVICIRQLFQEDLYIIITVIYR*WREGRYKSVQRPCIFVHIID 505
           +G C +I +  +F+   Y+I T     WR+  +  V+RP + +H I+
Sbjct: 106 AGACMIISVVSIFENRFYVICTFS---WRD-HWTIVRRPWLLLHYIE 148


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 669  RWQRAIKDSGYCHVICIRQLFQEDLYIIITVIYR*WREGRYKSVQRPCI 523
            RW+      G  HVI  + + ++ LY ++    R W +G + SV R  I
Sbjct: 2182 RWENV---EGVAHVIDAKAMSKDSLYGVMDPNTREWTDGLFTSVIRKII 2227


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 669  RWQRAIKDSGYCHVICIRQLFQEDLYIIITVIYR*WREGRYKSVQRPCI 523
            RW+      G  HVI  + + ++ LY ++    R W +G + SV R  I
Sbjct: 2182 RWENV---EGVAHVIDAKAMSKDSLYGVMDPNTREWTDGLFTSVIRKII 2227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,815
Number of Sequences: 27780
Number of extensions: 345064
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)