Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11021
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   2.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.7  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 522 FVHIIDKDPPIWPISTCSFTSVGASGAFGGH 430
           FVH   K+  +W    C+F SV       G+
Sbjct: 105 FVHESLKNVLLWDFQECTFISVNGKEVHSGN 135


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 26  NTVEFLHVCCNKYRSLHEKVSYL 94
           N   +  + CN YR L+  ++Y+
Sbjct: 92  NNNNYKKLYCNNYRKLYYNINYI 114


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 587 LSPSFIVDGARVG 549
           LSPS + DGAR G
Sbjct: 419 LSPSSLADGARFG 431


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 587 LSPSFIVDGARVG 549
           LSPS + DGAR G
Sbjct: 419 LSPSSLADGARFG 431


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +2

Query: 374 EAFDYIGSQRVAY-DIK 421
           EAFDY+ S+ + Y D+K
Sbjct: 477 EAFDYLHSRNIIYRDLK 493


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 129 LGDQNVYYSLFPRTKESKKQSITLVTARIDSASLFDGVSPG 251
           +G+ N+ Y+L P T+E     I  V AR+  +S     + G
Sbjct: 105 VGECNIQYALNPNTEE---YYIIEVNARLSRSSALASKATG 142


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/27 (25%), Positives = 11/27 (40%)
 Frame = +2

Query: 356 WTLFNGEAFDYIGSQRVAYDIKRGVWP 436
           W     E ++Y+  +    D   G WP
Sbjct: 468 WVCDQCEEYEYVHDEYTCMDCGPGKWP 494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,101
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)