Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11021
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein si...    30   1.3  
At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein si...    30   1.3  

>At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 1024

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +1

Query: 490 DRWILINYVNENTWPLNAFVPTLAPSTINDGDNDIQIFLKQLSNAY----NMTIPGIFNG 657
           D+   INYVN  T        T +  +  +G ND +  + Q S AY    N T P    G
Sbjct: 608 DQGTAINYVNGRTSMTEPVKQTFSYYSAYNGSNDKEPLIPQNSGAYVFRPNGTFPINPEG 667

Query: 658 SLPTSSIH 681
            +P + IH
Sbjct: 668 QVPLTVIH 675


>At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 921

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +1

Query: 490 DRWILINYVNENTWPLNAFVPTLAPSTINDGDNDIQIFLKQLSNAY----NMTIPGIFNG 657
           D+   INYVN  T        T +  +  +G ND +  + Q S AY    N T P    G
Sbjct: 608 DQGTAINYVNGRTSMTEPVKQTFSYYSAYNGSNDKEPLIPQNSGAYVFRPNGTFPINPEG 667

Query: 658 SLPTSSIH 681
            +P + IH
Sbjct: 668 QVPLTVIH 675


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,779
Number of Sequences: 28952
Number of extensions: 313886
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)