Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11020
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    30   0.34 
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   7.3  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.6  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   9.6  
SPAC3F10.15c |spo12||Spo12 family protein|Schizosaccharomyces po...    25   9.6  

>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 311 IPVSKSNLYETNILWTLFNGEAFDYIGSQRVAYDIKRGVWP----PNAPLAPTDV 463
           I V   + Y  N+++T F+G   D I     AYD ++ V P    P  PL P DV
Sbjct: 335 INVHPRHPYAGNLVFTAFSGSHQDAISKGLKAYDERKAVDPVWKVPYLPLDPHDV 389


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +1

Query: 511 VNENTWPLNAFVPTLAPSTINDGDNDIQIFLKQLSNAYNMTIPGIFNGSLPPSSIHSFRR 690
           +++N +P ++F  +   +  + G NDI+     + N Y ++       +  PSS  S   
Sbjct: 139 LSDNLFPGSSFSASSQQNPSSPGSNDIKSEFAAVKNEYVLSPTSPTTSAAFPSSFSSLPL 198

Query: 691 ILSNVTET 714
           + S  T T
Sbjct: 199 VSSKPTGT 206


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 118 AIRLAIKTFIIPFSLERKNLRSSPSRW*LQGSIQLLYLMGCLRVLLFCRR 267
           A RL +K+F  PF LER +L +  +     G +  +     L+ L FC R
Sbjct: 442 ANRLFLKSFAHPFHLERYHLHAVAA----MGGLYQIMSSTHLKNLFFCSR 487


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 53  NKYRSLHEKVSYLNDSN 103
           N+Y+ L EK  Y NDSN
Sbjct: 246 NRYKELEEKRRYENDSN 262


>SPAC3F10.15c |spo12||Spo12 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 90

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 641 ESLMALCHRHLYIHSEEYYPM*QKPVICLK 730
           +SLM+ C   L  H ++YY   + PV+ L+
Sbjct: 50  DSLMSPCTAKLQAHKKKYYMKRKPPVMSLQ 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,380
Number of Sequences: 5004
Number of extensions: 70299
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)