Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11020
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0671 - 30769631-30769803,30770535-30770873,30770952-307710...    35   0.088
02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616...    31   1.4  
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94...    30   1.9  
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89...    30   2.5  
08_01_0379 + 3371125-3371988                                           29   4.4  
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    29   5.8  
08_02_0997 + 23409932-23410894                                         28   7.6  
07_03_1648 - 28382520-28382963,28383623-28383868                       28   7.6  

>02_05_0671 -
           30769631-30769803,30770535-30770873,30770952-30771036,
           30771229-30771369,30771802-30771873,30772183-30772302,
           30772606-30772677,30772758-30772895,30773249-30773320,
           30773609-30773685,30773761-30773837,30773960-30774077,
           30774852-30774930
          Length = 520

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 18/60 (30%), Positives = 37/60 (61%)
 Frame = +2

Query: 326 SNLYETNILWTLFNGEAFDYIGSQRVAYDIKRGVWPPNAPLAPTDVKLHVEIGQIGGSLS 505
           SNL +  +++ +FNGEA+ Y+GS++   ++ +G    N  ++   +   +EIG +G ++S
Sbjct: 206 SNL-KKQLVFAVFNGEAWGYLGSRKFLQELDQGADSVNG-ISSLLIDQVLEIGSVGKAIS 263


>02_05_1094 +
           34060262-34060385,34061256-34061428,34061505-34061686,
           34061789-34062073,34062160-34062218,34062349-34062385,
           34062485-34062556,34063613-34063937,34064027-34064410
          Length = 546

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 502 IRYVNENTWPLNAFVPTLAPSTINDGDNDIQIFLKQLSNAYNMTIPGIFNGSLPPSS 672
           + +  E+T  L+  +P + P+T N+     +    QL N  N  I  + NG+ PP +
Sbjct: 324 VAHPTEHT-ALDDIIPCVEPATANESLYRSRQVTYQLVNLVNQVITNVSNGNFPPQT 379


>12_01_0125 -
           946480-947242,947283-947374,947462-947680,948059-949156
          Length = 723

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/62 (24%), Positives = 36/62 (58%)
 Frame = +3

Query: 57  NTEVCMRRSATSTIVTTTKVCDPLGDQNVYYSLFPRTKESKKQSITLVTARIDSASLFDG 236
           NT++ +  S  S + + +K  +PL   +++ +++  T + KK + ++ T R ++AS  + 
Sbjct: 477 NTQLAIVHSKFSELTSASKTSNPLPTVDIFLAVYEDTLKWKKIAESISTNRTETASWENS 536

Query: 237 VS 242
           V+
Sbjct: 537 VT 538


>11_01_0115 -
           889159-889921,889962-890053,890141-890359,890738-891835
          Length = 723

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/56 (25%), Positives = 33/56 (58%)
 Frame = +3

Query: 57  NTEVCMRRSATSTIVTTTKVCDPLGDQNVYYSLFPRTKESKKQSITLVTARIDSAS 224
           NT++ +  S  S + + +K  +PL   +++ +++  T + KK + ++ T R ++AS
Sbjct: 477 NTQLAIVHSKFSELTSASKTSNPLPTVDIFLAVYEDTLKWKKIAESISTNRTETAS 532


>08_01_0379 + 3371125-3371988
          Length = 287

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/66 (30%), Positives = 24/66 (36%)
 Frame = +1

Query: 526 WPLNAFVPTLAPSTINDGDNDIQIFLKQLSNAYNMTIPGIFNGSLPPSSIHSFRRILSNV 705
           WPL   V T AP +   G          L     +   G   G + PS   SFR    NV
Sbjct: 189 WPLFGRVQTAAPVSYGGGHGSAAAATMFLDTVAPVAAAGGHRGEVGPSGQRSFRLFGVNV 248

Query: 706 TETGDM 723
              GD+
Sbjct: 249 ECGGDV 254


>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 592 QIFLKQLSNAYNMTIPGIFNGSLPPS 669
           ++ L+  S A N++ PG+  G+LPPS
Sbjct: 186 RLLLRYWSEALNLSPPGVRGGALPPS 211


>08_02_0997 + 23409932-23410894
          Length = 320

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 521 FSFTYLIRIHRSGRFQRVVLHRSVPAVHSAAT 426
           F F  LIR +RSGR  R++    VP    AAT
Sbjct: 10  FEFLPLIRCYRSGRVDRLLPDTRVPPSVDAAT 41


>07_03_1648 - 28382520-28382963,28383623-28383868
          Length = 229

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 552 GRYKSVQRPCIFVHISDKDPPIWPISTCSFTSVGASGAFGGHTPRF 415
           G + +V RPC  +    +  P    STC F S G  G  GG   R+
Sbjct: 111 GAWFTVTRPCSSILFQRRRRPS---STCEFRSGGGGGDDGGRAMRY 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,683,645
Number of Sequences: 37544
Number of extensions: 453328
Number of successful extensions: 993
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)