Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11020
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39236| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   5e-12
SB_59050| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)         30   1.9  
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)               30   2.6  
SB_31702| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-05)                 28   7.8  

>SB_39236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 33/79 (41%), Positives = 48/79 (60%)
 Frame = +3

Query: 15  LCSIQLNSFMFAAINTEVCMRRSATSTIVTTTKVCDPLGDQNVYYSLFPRTKESKKQSIT 194
           LCS QL  FMFAA +T  CMR++      T    CDPLGD N++ +L+P  +   ++ I 
Sbjct: 18  LCSAQLKDFMFAAKDTPTCMRKTNIPN-PTQNMFCDPLGDLNIWSTLYPMNRTPNEKEIV 76

Query: 195 LVTARIDSASLFDGVSPGA 251
           +V A++DS+S F  +  GA
Sbjct: 77  VVAAKMDSSSFFHDLVYGA 95


>SB_59050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 14/30 (46%), Positives = 23/30 (76%)
 Frame = +2

Query: 371 EAFDYIGSQRVAYDIKRGVWPPNAPLAPTD 460
           E++DYIGS R+ Y++++G++PPN    P D
Sbjct: 1   ESWDYIGSSRMVYEMEQGLFPPNPWKVPGD 30


>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
          Length = 1038

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = -1

Query: 695 NILLNECIDDGGREPLKIPGIVMLYAFDNCFRKICIS-----LSPSFIVDGARVGTK-AF 534
           N +LN  +    R P+    +  L+  D  F+K         + PSF+VD A +G K   
Sbjct: 685 NHVLNRVVFSFARLPMPPGTMGTLWRADERFKKTYFEKYPGMMKPSFVVDAACIGLKDGI 744

Query: 533 KGHV 522
           KGHV
Sbjct: 745 KGHV 748


>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
          Length = 564

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 520 NTWPLNAFVPTLAPSTINDGDNDIQIFLKQLSNAYNMTIPGIFNGSLPPSSIHSFR 687
           ++W  NA  PT   + + DG   + +    L        PG+   S PP SIH  R
Sbjct: 111 SSWLANAPYPTPLDTPLTDGAPGLSMHPTPLDTRVTDGAPGLPMHSTPPLSIHESR 166


>SB_31702| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-05)
          Length = 364

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 651 IKDSGYCHVICIRQLFQEDLYIIITVIY 568
           I+D+ +  VIC+  LF   +YI+I V++
Sbjct: 281 IRDTKHATVICLVTLFHFTVYIVIAVLF 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,599,560
Number of Sequences: 59808
Number of extensions: 543447
Number of successful extensions: 1185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)