Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11020
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical p...    42   4e-04
Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical p...    42   4e-04
AC024090-7|AAF35429.2|  294|Caenorhabditis elegans Hypothetical ...    28   6.9  
U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    28   9.1  

>Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical
           protein ZC434.6b protein.
          Length = 723

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +2

Query: 326 SNLYETNILWTLFNGEAFDYIGSQRVAYDIKRGVWPPNA--------PLAPTDVKLHVEI 481
           SN    N+ +  FNGE+ DYIGS   AY ++ G +P           P+ P ++   +E+
Sbjct: 327 SNTSNRNVFFAFFNGESLDYIGSGAAAYQMENGKFPQMIRSDRTHIHPIRPNELDYILEV 386

Query: 482 GQIG 493
            QIG
Sbjct: 387 QQIG 390


>Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical
           protein ZC434.6a protein.
          Length = 721

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +2

Query: 326 SNLYETNILWTLFNGEAFDYIGSQRVAYDIKRGVWPPNA--------PLAPTDVKLHVEI 481
           SN    N+ +  FNGE+ DYIGS   AY ++ G +P           P+ P ++   +E+
Sbjct: 327 SNTSNRNVFFAFFNGESLDYIGSGAAAYQMENGKFPQMIRSDRTHIHPIRPNELDYILEV 386

Query: 482 GQIG 493
            QIG
Sbjct: 387 QQIG 390


>AC024090-7|AAF35429.2|  294|Caenorhabditis elegans Hypothetical
           protein C52E2.1 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 625 NMTIPGIFNGSL-PPSSIHSFRRILSNVTETGDMLEMLLVDHKETFTMF 768
           N  I  + + SL  P+S+ S     +NV+ T D +E+ LV+   T +MF
Sbjct: 22  NFAIIDLLSFSLVSPNSVRSLNIRAANVSVTLDFIEIFLVEAAGTHSMF 70


>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
           protein 5 protein.
          Length = 1198

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 586 DIQIFLKQLSNAYNMTIPGIFNGSLPPSSIHSFRRILS 699
           D +     L N +N T+ G FN S+PP    + +  LS
Sbjct: 456 DFESVKDSLQNNHNDTLEGSFNSSMPPPGRDATQSFLS 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,798,657
Number of Sequences: 27780
Number of extensions: 403332
Number of successful extensions: 948
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)