Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11020
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.47 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.7  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 519 FVHISDKDPPIWPISTCSFTSVGASGAFGGH 427
           FVH S K+  +W    C+F SV       G+
Sbjct: 105 FVHESLKNVLLWDFQECTFISVNGKEVHSGN 135


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 23  NTVEFLHVCCNKYRSLHEKVSYL 91
           N   +  + CN YR L+  ++Y+
Sbjct: 92  NNNNYKKLYCNNYRKLYYNINYI 114


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 584 LSPSFIVDGARVG 546
           LSPS + DGAR G
Sbjct: 419 LSPSSLADGARFG 431


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 584 LSPSFIVDGARVG 546
           LSPS + DGAR G
Sbjct: 419 LSPSSLADGARFG 431


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 261  TEQQHPETPHQIKKLNRSLQS 199
            TEQ  PE P  IK L  S +S
Sbjct: 1175 TEQDAPEAPIAIKALVMSSES 1195


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +2

Query: 371 EAFDYIGSQRVAY-DIK 418
           EAFDY+ S+ + Y D+K
Sbjct: 477 EAFDYLHSRNIIYRDLK 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,333
Number of Sequences: 438
Number of extensions: 4682
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)