Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11020
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74180.1 68414.m08591 leucine-rich repeat family protein cont...    33   0.22 
At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi...    30   1.6  
At3g09100.1 68416.m01071 mRNA capping enzyme family protein simi...    30   1.6  

>At1g74180.1 68414.m08591 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 951

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 616 NAYNMTIPGIFNGSLPPSSIHSFRRILSNVTETGDMLEMLLVDHKETFTMFSTTLL 783
           +A N  + G+ + S+PP S H    +LSN    G +   LL  H   F   S  LL
Sbjct: 532 DASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLL 587


>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 672

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 646 FNGSLPPSSIHSFRRILSNVTETGDMLEMLLVDHKETFTMFSTT 777
           +N  +PP S +SF++++ N    G  L  L++D   T   +STT
Sbjct: 111 YNNHVPPGSRYSFKQVIHNQRIAGRKLG-LVIDLTNTTRYYSTT 153


>At3g09100.1 68416.m01071 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 471

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 646 FNGSLPPSSIHSFRRILSNVTETGDMLEMLLVDHKETFTMFSTT 777
           +N  +PP S +SF++++ N    G  L  L++D   T   +STT
Sbjct: 111 YNNHVPPGSRYSFKQVIHNQRIAGRKLG-LVIDLTNTTRYYSTT 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,416,646
Number of Sequences: 28952
Number of extensions: 364775
Number of successful extensions: 886
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)